KEGG   PATHWAY: ppg00020
Entry
ppg00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas putida GB-1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppg00020  Citrate cycle (TCA cycle)
ppg00020

Module
ppg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ppg00020]
ppg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ppg00020]
ppg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ppg00020]
ppg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ppg00020]
ppg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ppg00020]
Other DBs
GO: 0006099
Organism
Pseudomonas putida GB-1 [GN:ppg]
Gene
PputGB1_3765  citrate synthase I [KO:K01647] [EC:2.3.3.1]
PputGB1_1654  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
PputGB1_1940  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PputGB1_3616  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
PputGB1_3617  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
PputGB1_3760  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
PputGB1_3759  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
PputGB1_3758  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PputGB1_3965  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PputGB1_5416  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PputGB1_3756  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
PputGB1_3757  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
PputGB1_0170  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
PputGB1_3762  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PputGB1_3761  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
PputGB1_3764  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
PputGB1_3763  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
PputGB1_4454  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01676] [EC:4.2.1.2]
PputGB1_0951  Fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PputGB1_1346  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
PputGB1_0697  Lactate/malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PputGB1_0792  malate--quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PputGB1_1661  malate--quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PputGB1_2851  malate--quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PputGB1_4141  malate--quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PputGB1_5396  acetyl-CoA carboxylase, biotin carboxylase [KO:K01959] [EC:6.4.1.1]
PputGB1_5395  oxaloacetate decarboxylase alpha subunit [KO:K01960] [EC:6.4.1.1]
PputGB1_0278  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
PputGB1_0367  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
PputGB1_0366  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
PputGB1_0598  alpha/beta hydrolase fold [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ppg00010  Glycolysis / Gluconeogenesis
ppg00053  Ascorbate and aldarate metabolism
ppg00061  Fatty acid biosynthesis
ppg00071  Fatty acid degradation
ppg00190  Oxidative phosphorylation
ppg00220  Arginine biosynthesis
ppg00250  Alanine, aspartate and glutamate metabolism
ppg00280  Valine, leucine and isoleucine degradation
ppg00350  Tyrosine metabolism
ppg00470  D-Amino acid metabolism
ppg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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