KEGG   PATHWAY: ppuu00020
Entry
ppuu00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas sp. UW4
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppuu00020  Citrate cycle (TCA cycle)
ppuu00020

Module
ppuu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ppuu00020]
ppuu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ppuu00020]
ppuu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ppuu00020]
ppuu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ppuu00020]
ppuu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ppuu00020]
Other DBs
GO: 0006099
Organism
Pseudomonas sp. UW4 [GN:ppuu]
Gene
PputUW4_03806  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
PputUW4_03534  acnA1; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
PputUW4_02915  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PputUW4_01821  icd1; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
PputUW4_01822  icd2; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
PputUW4_03801  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PputUW4_03800  sucB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
PputUW4_02965  lpdA1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PputUW4_05411  lpdA3; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PputUW4_03799  lpdA2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PputUW4_03797  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
PputUW4_03798  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
PputUW4_00103  cat1; succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
PputUW4_03803  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PputUW4_03802  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PputUW4_03805  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
PputUW4_03804  sdhD; succinate dehydrogenase subunit D [KO:K00242]
PputUW4_04340  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
PputUW4_01343  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
PputUW4_02058  mqo1; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PputUW4_04558  mqo2; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PputUW4_05384  pycA; pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
PputUW4_05383  pycB; pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
PputUW4_00211  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
PputUW4_00395  aceE1; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
PputUW4_04151  aceE2; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
PputUW4_00394  aceF1; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
PputUW4_04150  aceF2; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ppuu00010  Glycolysis / Gluconeogenesis
ppuu00053  Ascorbate and aldarate metabolism
ppuu00061  Fatty acid biosynthesis
ppuu00071  Fatty acid degradation
ppuu00190  Oxidative phosphorylation
ppuu00220  Arginine biosynthesis
ppuu00250  Alanine, aspartate and glutamate metabolism
ppuu00280  Valine, leucine and isoleucine degradation
ppuu00350  Tyrosine metabolism
ppuu00470  D-Amino acid metabolism
ppuu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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