KEGG   PATHWAY: ppuu00630
Entry
ppuu00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pseudomonas sp. UW4
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppuu00630  Glyoxylate and dicarboxylate metabolism
ppuu00630

Module
ppuu_M00621  Glycine cleavage system [PATH:ppuu00630]
Other DBs
GO: 0046487 0043648
Organism
Pseudomonas sp. UW4 [GN:ppuu]
Gene
PputUW4_00039  [KO:K01091] [EC:3.1.3.18]
PputUW4_00062  katE1; hydroperoxidase II [KO:K03781] [EC:1.11.1.6]
PputUW4_00285  glnA1; glutamine synthetase, type I [KO:K01915] [EC:6.3.1.2]
PputUW4_00309  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
PputUW4_00575  [KO:K00626] [EC:2.3.1.9]
PputUW4_00843  [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
PputUW4_00910  [KO:K00126] [EC:1.17.1.9]
PputUW4_00911  [KO:K00126] [EC:1.17.1.9]
PputUW4_00912  [KO:K00123] [EC:1.17.1.9]
PputUW4_00913  [KO:K00124]
PputUW4_00914  [KO:K00127]
PputUW4_01296  [KO:K01915] [EC:6.3.1.2]
PputUW4_01593  [KO:K00626] [EC:2.3.1.9]
PputUW4_01756  [KO:K03781] [EC:1.11.1.6]
PputUW4_01813  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
PputUW4_01863  glyA1; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
PputUW4_01864  gcvH1; glycine cleavage system protein H [KO:K02437]
PputUW4_01890  glnA2; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PputUW4_01994  atoB; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
PputUW4_02170  [KO:K05606] [EC:5.1.99.1]
PputUW4_02231  [KO:K01895] [EC:6.2.1.1]
PputUW4_02428  glxK; glycerate kinase [KO:K00865] [EC:2.7.1.165]
PputUW4_02462  [KO:K01895] [EC:6.2.1.1]
PputUW4_02464  [KO:K00626] [EC:2.3.1.9]
PputUW4_02556  fdnG; formate dehydrogenase-O, major subunit [KO:K00123] [EC:1.17.1.9]
PputUW4_02557  fdoG; formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
PputUW4_02558  fdoH; formate dehydrogenase, beta subunit [KO:K00124]
PputUW4_02559  fdoI; formate dehydrogenase, gamma subunit [KO:K00127]
PputUW4_02570  acsA1; acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
PputUW4_02765  [KO:K01915] [EC:6.3.1.2]
PputUW4_02915  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PputUW4_02965  lpdA1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PputUW4_03105  puuA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PputUW4_03117  glcD; glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
PputUW4_03118  glcE; glycolate oxidase FAD binding subunit GlcE [KO:K11472] [EC:1.1.99.14]
PputUW4_03119  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
PputUW4_03244  glnA3; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PputUW4_03426  [KO:K07248] [EC:1.2.1.22 1.2.1.21]
PputUW4_03534  acnA1; aconitate hydratase [KO:K27802]
PputUW4_03657  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
PputUW4_03684  [KO:K00626] [EC:2.3.1.9]
PputUW4_03710  [KO:K05825] [EC:2.6.1.-]
PputUW4_03799  lpdA2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PputUW4_03806  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
PputUW4_03819  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
PputUW4_03820  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
PputUW4_03821  [KO:K00042] [EC:1.1.1.60]
PputUW4_03822  [KO:K11529] [EC:2.7.1.165]
PputUW4_04040  [KO:K01091] [EC:3.1.3.18]
PputUW4_04145  glnA4; L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PputUW4_04183  acsA2; acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
PputUW4_04244  [KO:K17865] [EC:4.2.1.55]
PputUW4_04248  eda; keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PputUW4_04280  gcvH2; glycine cleavage system protein H [KO:K02437]
PputUW4_04281  gcvP1; glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
PputUW4_04283  gcvT1; glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
PputUW4_04324  purU1; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PputUW4_04545  hprA; glycerate dehydrogenase [KO:K00018] [EC:1.1.1.29]
PputUW4_04635  acsA3; acetyl-CoA synthase [KO:K01895] [EC:6.2.1.1]
PputUW4_04696  glyA2; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
PputUW4_04857  cat; catalase-like protein [KO:K03781] [EC:1.11.1.6]
PputUW4_04922  gph2; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
PputUW4_04990  glcB; malate synthase G [KO:K01638] [EC:2.3.3.9]
PputUW4_05007  purU2; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PputUW4_05012  glyA3; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
PputUW4_05201  glnA5; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PputUW4_05203  glnA6; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PputUW4_05228  gcvP2; glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
PputUW4_05229  gcvH3; glycine cleavage system protein H [KO:K02437]
PputUW4_05230  gcvT2; glycine cleavage system aminomethyltransferaseT [KO:K00605] [EC:2.1.2.10]
PputUW4_05411  lpdA3; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00049  L-Aspartate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C05840  Iminoaspartate
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C19838  D-erythro-3-Hydroxyaspartate
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
ppuu00010  Glycolysis / Gluconeogenesis
ppuu00020  Citrate cycle (TCA cycle)
ppuu00030  Pentose phosphate pathway
ppuu00053  Ascorbate and aldarate metabolism
ppuu00071  Fatty acid degradation
ppuu00230  Purine metabolism
ppuu00250  Alanine, aspartate and glutamate metabolism
ppuu00260  Glycine, serine and threonine metabolism
ppuu00270  Cysteine and methionine metabolism
ppuu00620  Pyruvate metabolism
ppuu00710  Carbon fixation by Calvin cycle
ppuu00750  Vitamin B6 metabolism
ppuu00910  Nitrogen metabolism
KO pathway
ko00630   

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