KEGG   PATHWAY: pqi02025
Entry
pqi02025                    Pathway                                
Name
Biofilm formation - Pseudomonas aeruginosa - Pseudomonas qingdaonensis
Description
Surface colonization and subsequent biofilm formation and development provide numerous advantages to microorganisms. The main key actors relevant in the regulation of biofilm formation by Pseudomonas aeruginosa include cAMP/Vfr signaling, quorum sensing (QS) systems, Gac/Rsm pathway, and c-di-GMP signaling. cAMP/Vfr signaling regulates the transcription of hundreds of genes encoding diverse virulence factors, including the type 2 secretion system and type 3 secretion system and their associated toxins, type IV pili, and flagella. It is demonstrated that the accumulation of cAMP inhibits the attachment phase of biofilm formation. The QS systems are arranged hierarchically with the las system positively regulating both the rhl and PQS systems. These three QS systems are involved in the regulation of virulence factor production, biofilm maturation, and motility phenotypes. GacS/GacA two-component system is promoting the expression of two small regulatory RNAs, RsmY and RsmZ, which sequester the translational repressor RsmA. Titration of RsmA induces the production of sessile and biofilm determinants, whereas free RsmA leads to a planktonic and more virulent lifestyle. c-di-GMP is a ubiquitous bacterial second messenger. Synthesis and degradation of c-di-GMP is facilitated by diguanylate cyclases (DGC) and phosphodiesterases (PDE). High intracellular levels of c-di-GMP evoke the processes leading to the production of biofilm matrix, while a decrease in its level causes an increase in cell motility and transition into the planktonic forms of growth.
Class
Cellular Processes; Cellular community - prokaryotes
Pathway map
pqi02025  Biofilm formation - Pseudomonas aeruginosa
pqi02025

Organism
Pseudomonas qingdaonensis [GN:pqi]
Gene
KH389_01965  type IV pili methyl-accepting chemotaxis transducer N-terminal domain-containing protein [KO:K02660]
KH389_01960  chemotaxis protein CheW [KO:K02659]
KH389_01970  Hpt domain-containing protein [KO:K06596]
KH389_01975  chemotaxis protein CheW [KO:K06598]
KH389_01955  pilH; twitching motility response regulator PilH [KO:K02658]
KH389_01950  pilG; twitching motility response regulator PilG [KO:K02657]
KH389_02315  cpdA; 3',5'-cyclic-AMP phosphodiesterase [KO:K03651] [EC:3.1.4.53]
KH389_24500  crp; cAMP-activated global transcriptional regulator CRP [KO:K10914]
KH389_21605  Crp/Fnr family transcriptional regulator [KO:K10914]
KH389_07535  cyclic nucleotide-binding domain-containing protein [KO:K10914]
KH389_08390  fleQ; transcriptional regulator FleQ [KO:K10941]
KH389_17000  GNAT family N-acetyltransferase [KO:K13061] [EC:2.3.1.184]
KH389_24525  anthranilate synthase component I [KO:K01657] [EC:4.1.3.27]
KH389_24520  aminodeoxychorismate/anthranilate synthase component II [KO:K01658] [EC:4.1.3.27]
KH389_20450  response regulator [KO:K07678] [EC:2.7.13.3]
KH389_23500  hybrid sensor histidine kinase/response regulator [KO:K20971]
KH389_02825  response regulator [KO:K20972]
KH389_10485  uvrY; UvrY/SirA/GacA family response regulator transcription factor [KO:K07689]
KH389_06145  csrA; carbon storage regulator CsrA [KO:K03563]
KH389_08120  csrA; carbon storage regulator CsrA [KO:K03563]
KH389_10940  csrA; carbon storage regulator CsrA [KO:K03563]
KH389_19980  csrA; carbon storage regulator CsrA [KO:K03563]
KH389_19465  response regulator [KO:K20973] [EC:2.7.13.3]
KH389_09420  response regulator [KO:K20974] [EC:2.7.13.3]
KH389_13230  PAS domain-containing protein [KO:K20975] [EC:2.7.13.3]
KH389_08445  Hpt domain-containing protein [KO:K20976]
KH389_08440  fused response regulator/phosphatase [KO:K20977]
KH389_08435  STAS domain-containing protein [KO:K20978]
KH389_08250  flgM; flagellar biosynthesis anti-sigma factor FlgM [KO:K02398]
KH389_08510  RNA polymerase sigma factor FliA [KO:K02405]
KH389_03580  serine/threonine-protein phosphatase [KO:K11915] [EC:3.1.3.16]
KH389_03575  tssM; type VI secretion system membrane subunit TssM [KO:K11891]
KH389_03565  tssK; type VI secretion system baseplate subunit TssK [KO:K11893]
KH389_03515  tssB; type VI secretion system contractile sheath small subunit [KO:K11901]
KH389_03520  tssC; type VI secretion system contractile sheath large subunit [KO:K11900]
KH389_25225  Hcp family type VI secretion system effector [KO:K11903]
KH389_03590  Hcp family type VI secretion system effector [KO:K11903]
KH389_19030  Hcp family type VI secretion system effector [KO:K11903]
KH389_03535  tssG; type VI secretion system baseplate subunit TssG [KO:K11895]
KH389_03540  tssH; type VI secretion system ATPase TssH [KO:K11907]
KH389_05695  methyl-accepting chemotaxis protein [KO:K13487]
KH389_05715  hybrid sensor histidine kinase/response regulator [KO:K13490]
KH389_05700  purine-binding chemotaxis protein CheW [KO:K13488]
KH389_05710  purine-binding chemotaxis protein CheW [KO:K13489]
KH389_05720  chemotaxis response regulator protein-glutamate methylesterase [KO:K13491] [EC:3.1.1.61]
KH389_05725  PleD family two-component system response regulator [KO:K11444] [EC:2.7.7.65]
KH389_21735  GGDEF domain-containing protein [KO:K21019] [EC:2.7.7.65]
KH389_03235  diguanylate cyclase [KO:K21021] [EC:2.7.7.65]
KH389_13690  EAL domain-containing protein [KO:K21023] [EC:2.7.7.65]
KH389_21820  EAL domain-containing protein [KO:K21024] [EC:3.1.4.52]
KH389_22300  mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase [KO:K16011] [EC:2.7.7.13 5.3.1.8]
KH389_18620  mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase [KO:K16011] [EC:2.7.7.13 5.3.1.8]
KH389_18625  glycosyltransferase family 4 protein [KO:K21001]
KH389_22255  alginate biosynthesis protein Alg44 [KO:K19291] [EC:2.4.1.33]
KH389_10470  PilZ domain-containing protein [KO:K19291] [EC:2.4.1.33]
Compound
C00044  GTP
C00575  3',5'-Cyclic AMP
C11837  N-Butyryl-L-homoserine lactone
C11848  2-Heptyl-3-hydroxy-quinolone
C16463  3',5'-Cyclic diGMP
C18076  5'-Phosphoguanylyl(3'->5')guanosine
C20643  2-Heptyl-4(1H)-quinolone
C21201  N-3-Oxo-dodecanoyl-L-homoserine lactone
Reference
  Authors
Coggan KA, Wolfgang MC
  Title
Global regulatory pathways and cross-talk control pseudomonas aeruginosa environmental lifestyle and virulence phenotype.
  Journal
Curr Issues Mol Biol 14:47-70 (2012)
Reference
  Authors
Rasamiravaka T, Labtani Q, Duez P, El Jaziri M
  Title
The formation of biofilms by Pseudomonas aeruginosa: a review of the natural and synthetic compounds interfering with control mechanisms.
  Journal
Biomed Res Int 2015:759348 (2015)
DOI:10.1155/2015/759348
Reference
  Authors
Valentini M, Filloux A
  Title
Biofilms and Cyclic di-GMP (c-di-GMP) Signaling: Lessons from Pseudomonas aeruginosa and Other Bacteria.
  Journal
J Biol Chem 291:12547-55 (2016)
DOI:10.1074/jbc.R115.711507
Reference
  Authors
Hengge R
  Title
Principles of c-di-GMP signalling in bacteria.
  Journal
Nat Rev Microbiol 7:263-73 (2009)
DOI:10.1038/nrmicro2109
Reference
  Authors
Liang ZX
  Title
The expanding roles of c-di-GMP in the biosynthesis of exopolysaccharides and secondary metabolites.
  Journal
Nat Prod Rep 32:663-83 (2015)
DOI:10.1039/c4np00086b
Reference
  Authors
Fulcher NB, Holliday PM, Klem E, Cann MJ, Wolfgang MC
  Title
The Pseudomonas aeruginosa Chp chemosensory system regulates intracellular cAMP levels by modulating adenylate cyclase activity.
  Journal
Mol Microbiol 76:889-904 (2010)
DOI:10.1111/j.1365-2958.2010.07135.x
Reference
  Authors
Marsden AE, Intile PJ, Schulmeyer KH, Simmons-Patterson ER, Urbanowski ML, Wolfgang MC, Yahr TL
  Title
Vfr Directly Activates exsA Transcription To Regulate Expression of the Pseudomonas aeruginosa Type III Secretion System.
  Journal
J Bacteriol 198:1442-50 (2016)
DOI:10.1128/JB.00049-16
Reference
  Authors
Brencic A, Lory S
  Title
Determination of the regulon and identification of novel mRNA targets of Pseudomonas aeruginosa RsmA.
  Journal
Mol Microbiol 72:612-32 (2009)
DOI:10.1111/j.1365-2958.2009.06670.x
Reference
  Authors
Hsu JL, Chen HC, Peng HL, Chang HY
  Title
Characterization of the histidine-containing phosphotransfer protein B-mediated multistep phosphorelay system in Pseudomonas aeruginosa PAO1.
  Journal
J Biol Chem 283:9933-44 (2008)
DOI:10.1074/jbc.M708836200
Reference
  Authors
Guvener ZT, Harwood CS
  Title
Subcellular location characteristics of the Pseudomonas aeruginosa GGDEF protein, WspR, indicate that it produces cyclic-di-GMP in response to growth on surfaces.
  Journal
Mol Microbiol 66:1459-73 (2007)
DOI:10.1111/j.1365-2958.2007.06008.x
Reference
  Authors
Irie Y, Starkey M, Edwards AN, Wozniak DJ, Romeo T, Parsek MR
  Title
Pseudomonas aeruginosa biofilm matrix polysaccharide Psl is regulated transcriptionally by RpoS and post-transcriptionally by RsmA.
  Journal
Mol Microbiol 78:158-72 (2010)
DOI:10.1111/j.1365-2958.2010.07320.x
Related
pathway
pqi02024  Quorum sensing
pqi02040  Flagellar assembly
pqi03070  Bacterial secretion system
KO pathway
ko02025   
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