KEGG   PATHWAY: pret00030
Entry
pret00030                   Pathway                                
Name
Pentose phosphate pathway - Poecilia reticulata (guppy)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pret00030  Pentose phosphate pathway
pret00030

Module
pret_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:pret00030]
pret_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:pret00030]
pret_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:pret00030]
pret_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:pret00030]
Other DBs
GO: 0006098
Organism
Poecilia reticulata (guppy) [GN:pret]
Gene
103461117  glucose-6-phosphate isomerase-like [KO:K01810] [EC:5.3.1.9]
103462637  gpi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
103466381  glucose-6-phosphate isomerase-like [KO:K01810] [EC:5.3.1.9]
103467627  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
103467320  glucose-6-phosphate 1-dehydrogenase-like isoform X2 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
103468767  pgls; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
103464522  h6pd; GDH/6PGL endoplasmic bifunctional protein [KO:K13937] [EC:1.1.1.47 3.1.1.31]
103467221  pgd; 6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
103459358  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
103465119  transketolase-like [KO:K00615] [EC:2.2.1.1]
103468019  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
103467440  transketolase-like [KO:K00615] [EC:2.2.1.1]
103462702  taldo1; transaldolase [KO:K00616] [EC:2.2.1.2]
103458170  rpia; ribose-5-phosphate isomerase isoform X1 [KO:K01807] [EC:5.3.1.6]
103476043  shpk; sedoheptulokinase [KO:K11214] [EC:2.7.1.14]
103459736  dera; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
103458683  rbks; ribokinase [KO:K00852] [EC:2.7.1.15]
103463049  pgm1; phosphoglucomutase-1 isoform X1 [KO:K01835] [EC:5.4.2.2]
103479017  phosphoglucomutase-1-like [KO:K01835] [EC:5.4.2.2]
103466707  pgm2; phosphoglucomutase-2 [KO:K15779] [EC:5.4.2.2 5.4.2.7]
103460982  ribose-phosphate pyrophosphokinase 2-like [KO:K00948] [EC:2.7.6.1]
103474695  prps2; ribose-phosphate pyrophosphokinase 2 [KO:K00948] [EC:2.7.6.1]
103471178  prps1; ribose-phosphate pyrophosphokinase 1 isoform X1 [KO:K00948] [EC:2.7.6.1]
103481319  rgn; regucalcin [KO:K01053] [EC:3.1.1.17]
103470206  idnk; probable gluconokinase isoform X1 [KO:K00851] [EC:2.7.1.12]
103464499  glyctk; glycerate kinase [KO:K11529] [EC:2.7.1.165]
103471295  aldob; aldolase B, fructose-bisphosphate [KO:K01623] [EC:4.1.2.13]
103461260  fructose-bisphosphate aldolase C-like [KO:K01623] [EC:4.1.2.13]
103475487  aldoc; fructose-bisphosphate aldolase C [KO:K01623] [EC:4.1.2.13]
103481404  fructose-bisphosphate aldolase A [KO:K01623] [EC:4.1.2.13]
103470739  fructose-1,6-bisphosphatase 1-like [KO:K03841] [EC:3.1.3.11]
103470743  fructose-1,6-bisphosphatase isozyme 2-like [KO:K03841] [EC:3.1.3.11]
103473350  fructose-1,6-bisphosphatase 1-like [KO:K03841] [EC:3.1.3.11]
103465370  ATP-dependent 6-phosphofructokinase, muscle type-like [KO:K00850] [EC:2.7.1.11]
103461653  pfkl; ATP-dependent 6-phosphofructokinase, liver type [KO:K00850] [EC:2.7.1.11]
103467300  ATP-dependent 6-phosphofructokinase, muscle type-like [KO:K00850] [EC:2.7.1.11]
103479939  pfkp; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 [KO:K00850] [EC:2.7.1.11]
103482255  ATP-dependent 6-phosphofructokinase, platelet type-like isoform X1 [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
pret00010  Glycolysis / Gluconeogenesis
pret00040  Pentose and glucuronate interconversions
pret00052  Galactose metabolism
pret00230  Purine metabolism
pret00240  Pyrimidine metabolism
pret00340  Histidine metabolism
pret00630  Glyoxylate and dicarboxylate metabolism
pret00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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