KEGG   PATHWAY: prot00020
Entry
prot00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Proteus sp. CD3
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
prot00020  Citrate cycle (TCA cycle)
prot00020

Module
prot_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:prot00020]
prot_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:prot00020]
prot_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:prot00020]
prot_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:prot00020]
prot_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:prot00020]
Other DBs
GO: 0006099
Organism
Proteus sp. CD3 [GN:prot]
Gene
BTA34_03995  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BTA34_07035  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BTA34_11685  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BTA34_05605  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BTA34_04020  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BTA34_04025  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BTA34_11690  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BTA34_04035  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BTA34_04030  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BTA34_04010  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BTA34_04015  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BTA34_04000  succinate dehydrogenase cytochrome b556 large subunit [KO:K00241]
BTA34_04005  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BTA34_00950  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
BTA34_00945  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
BTA34_00940  fumarate reductase subunit C [KO:K00246]
BTA34_00935  fumarate reductase subunit D [KO:K00247]
BTA34_07160  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BTA34_00105  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BTA34_04860  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BTA34_16405  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BTA34_11700  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BTA34_11695  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
prot00010  Glycolysis / Gluconeogenesis
prot00053  Ascorbate and aldarate metabolism
prot00061  Fatty acid biosynthesis
prot00071  Fatty acid degradation
prot00190  Oxidative phosphorylation
prot00220  Arginine biosynthesis
prot00250  Alanine, aspartate and glutamate metabolism
prot00280  Valine, leucine and isoleucine degradation
prot00350  Tyrosine metabolism
prot00470  D-Amino acid metabolism
prot00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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