KEGG   PATHWAY: prq00020
Entry
prq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Providencia huaxiensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
prq00020  Citrate cycle (TCA cycle)
prq00020

Module
prq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:prq00020]
prq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:prq00020]
prq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:prq00020]
prq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:prq00020]
prq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:prq00020]
Other DBs
GO: 0006099
Organism
Providencia huaxiensis [GN:prq]
Gene
CYG50_10335  citrate synthase [KO:K01647] [EC:2.3.3.1]
CYG50_04930  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CYG50_22725  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CYG50_03400  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CYG50_10310  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CYG50_10305  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CYG50_22695  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CYG50_10295  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CYG50_10300  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CYG50_10320  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CYG50_10315  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CYG50_10330  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
CYG50_10325  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
CYG50_19475  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
CYG50_19470  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
CYG50_19465  frdC; fumarate reductase subunit FrdC [KO:K00246]
CYG50_19460  frdD; fumarate reductase subunit FrdD [KO:K00247]
CYG50_19205  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CYG50_05060  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CYG50_18105  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CYG50_18015  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
CYG50_15635  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CYG50_22685  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CYG50_22690  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
prq00010  Glycolysis / Gluconeogenesis
prq00053  Ascorbate and aldarate metabolism
prq00061  Fatty acid biosynthesis
prq00071  Fatty acid degradation
prq00190  Oxidative phosphorylation
prq00220  Arginine biosynthesis
prq00250  Alanine, aspartate and glutamate metabolism
prq00280  Valine, leucine and isoleucine degradation
prq00350  Tyrosine metabolism
prq00470  D-Amino acid metabolism
prq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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