KEGG   PATHWAY: psap00020
Entry
psap00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Paracoccus saliphilus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
psap00020  Citrate cycle (TCA cycle)
psap00020

Module
psap_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:psap00020]
psap_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:psap00020]
psap_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:psap00020]
psap_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:psap00020]
psap_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:psap00020]
Other DBs
GO: 0006099
Organism
Paracoccus saliphilus [GN:psap]
Gene
JHX88_12645  citrate synthase [KO:K01647] [EC:2.3.3.1]
JHX88_08405  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
JHX88_13970  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
JHX88_13575  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
JHX88_13580  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
JHX88_10845  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JHX88_13600  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JHX88_14170  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JHX88_03260  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
JHX88_13565  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
JHX88_03255  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
JHX88_13560  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
JHX88_13510  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
JHX88_13490  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
JHX88_13520  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
JHX88_13515  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
JHX88_01210  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
JHX88_13550  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JHX88_12220  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
JHX88_18740  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
JHX88_10855  mdeB; alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
JHX88_21850  transketolase [KO:K00163] [EC:1.2.4.1]
JHX88_04360  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
JHX88_04355  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
JHX88_04350  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
JHX88_10850  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
psap00010  Glycolysis / Gluconeogenesis
psap00053  Ascorbate and aldarate metabolism
psap00061  Fatty acid biosynthesis
psap00071  Fatty acid degradation
psap00190  Oxidative phosphorylation
psap00220  Arginine biosynthesis
psap00250  Alanine, aspartate and glutamate metabolism
psap00280  Valine, leucine and isoleucine degradation
psap00350  Tyrosine metabolism
psap00470  D-Amino acid metabolism
psap00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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