KEGG   PATHWAY: psaz00020
Entry
psaz00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudoalteromonas sp. A25
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
psaz00020  Citrate cycle (TCA cycle)
psaz00020

Module
psaz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:psaz00020]
psaz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:psaz00020]
psaz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:psaz00020]
psaz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:psaz00020]
psaz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:psaz00020]
Other DBs
GO: 0006099
Organism
Pseudoalteromonas sp. A25 [GN:psaz]
Gene
PA25_17710  citrate synthase [KO:K01647] [EC:2.3.3.1]
PA25_01120  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
PA25_30520  aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PA25_14110  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
PA25_32920  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
PA25_17660  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
PA25_17650  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
PA25_26250  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PA25_17630  succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
PA25_17640  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
PA25_17680  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PA25_17670  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PA25_17700  sdhC; succinate dehydrogenase cytochrome b556 large subunit [KO:K00241]
PA25_17690  sdhD; succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
PA25_20490  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
PA25_00340  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
PA25_25900  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PA25_02190  pckA; phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
PA25_26270  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
PA25_26260  acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
psaz00010  Glycolysis / Gluconeogenesis
psaz00053  Ascorbate and aldarate metabolism
psaz00061  Fatty acid biosynthesis
psaz00071  Fatty acid degradation
psaz00190  Oxidative phosphorylation
psaz00220  Arginine biosynthesis
psaz00250  Alanine, aspartate and glutamate metabolism
psaz00280  Valine, leucine and isoleucine degradation
psaz00350  Tyrosine metabolism
psaz00470  D-Amino acid metabolism
psaz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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