KEGG   PATHWAY: psec00020
Entry
psec00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas sp. CCOS 191
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
psec00020  Citrate cycle (TCA cycle)
psec00020

Module
psec_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:psec00020]
psec_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:psec00020]
psec_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:psec00020]
psec_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:psec00020]
psec_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:psec00020]
Other DBs
GO: 0006099
Organism
Pseudomonas sp. CCOS 191 [GN:psec]
Gene
CCOS191_1612  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
CCOS191_3614  acnA2; Aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
CCOS191_1804  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CCOS191_3317  icd1; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
CCOS191_3318  icd2; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
CCOS191_1617  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CCOS191_1618  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
CCOS191_5262  lpd3; Dihydrolipoyl dehydrogenase 3 [KO:K00382] [EC:1.8.1.4]
CCOS191_1449  lpdV; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CCOS191_1619  lpdG; Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CCOS191_1621  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
CCOS191_1620  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
CCOS191_5158  cat1; Succinyl-CoA:coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
CCOS191_1615  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CCOS191_1616  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CCOS191_1613  putative membrane protein [KO:K00241]
CCOS191_1614  succinate dehydrogenase [KO:K00242]
CCOS191_4292  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CCOS191_4343  fumC1; Fumarate hydratase class II 1 [KO:K01679] [EC:4.2.1.2]
CCOS191_3896  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
CCOS191_3607  mqo1a; putative malate:quinone oxidoreductase 1 [KO:K00116] [EC:1.1.5.4]
CCOS191_4552  mqo1b; putative malate:quinone oxidoreductase 1 [KO:K00116] [EC:1.1.5.4]
CCOS191_3118  mqo3; putative malate:quinone oxidoreductase 3 [KO:K00116] [EC:1.1.5.4]
CCOS191_4002  mqo2; putative malate:quinone oxidoreductase 2 [KO:K00116] [EC:1.1.5.4]
CCOS191_5241  cfiB; 2-oxoglutarate carboxylase small subunit [KO:K01959] [EC:6.4.1.1]
CCOS191_5240  pycB; Pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
CCOS191_5081  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
CCOS191_4985  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
CCOS191_4422  pdhA; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
CCOS191_4986  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
psec00010  Glycolysis / Gluconeogenesis
psec00053  Ascorbate and aldarate metabolism
psec00061  Fatty acid biosynthesis
psec00071  Fatty acid degradation
psec00190  Oxidative phosphorylation
psec00220  Arginine biosynthesis
psec00250  Alanine, aspartate and glutamate metabolism
psec00280  Valine, leucine and isoleucine degradation
psec00350  Tyrosine metabolism
psec00470  D-Amino acid metabolism
psec00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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