KEGG   PATHWAY: psew00020
Entry
psew00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Paracoccus seriniphilus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
psew00020  Citrate cycle (TCA cycle)
psew00020

Module
psew_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:psew00020]
psew_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:psew00020]
psew_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:psew00020]
psew_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:psew00020]
psew_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:psew00020]
Other DBs
GO: 0006099
Organism
Paracoccus seriniphilus [GN:psew]
Gene
JHW44_11860  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
JHW44_10975  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
JHW44_19440  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
JHW44_03430  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
JHW44_08070  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
JHW44_08075  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
JHW44_06150  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JHW44_08090  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JHW44_14660  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JHW44_08060  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
JHW44_08055  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
JHW44_15135  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
JHW44_08010  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
JHW44_07990  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
JHW44_08020  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
JHW44_08015  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
JHW44_18345  FAD-binding protein [KO:K00244] [EC:1.3.5.1]
JHW44_18360  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
JHW44_18355  succinate dehydrogenase [KO:K00246]
JHW44_18350  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00247]
JHW44_06185  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
JHW44_08050  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JHW44_05325  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
JHW44_02995  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
JHW44_03905  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
JHW44_03900  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
JHW44_03895  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
psew00010  Glycolysis / Gluconeogenesis
psew00053  Ascorbate and aldarate metabolism
psew00061  Fatty acid biosynthesis
psew00071  Fatty acid degradation
psew00190  Oxidative phosphorylation
psew00220  Arginine biosynthesis
psew00250  Alanine, aspartate and glutamate metabolism
psew00280  Valine, leucine and isoleucine degradation
psew00350  Tyrosine metabolism
psew00470  D-Amino acid metabolism
psew00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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