KEGG   PATHWAY: psew00630
Entry
psew00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Paracoccus seriniphilus
Class
Metabolism; Carbohydrate metabolism
Pathway map
psew00630  Glyoxylate and dicarboxylate metabolism
psew00630

Module
psew_M00621  Glycine cleavage system [PATH:psew00630]
psew_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:psew00630]
Other DBs
GO: 0046487 0043648
Organism
Paracoccus seriniphilus [GN:psew]
Gene
JHW44_00115  [KO:K00626] [EC:2.3.1.9]
JHW44_02365  [KO:K14448] [EC:1.3.8.12]
JHW44_02445  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
JHW44_02450  [KO:K00626] [EC:2.3.1.9]
JHW44_02720  [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
JHW44_03300  [KO:K01915] [EC:6.3.1.2]
JHW44_03550  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
JHW44_03805  ccrA; crotonyl-CoA carboxylase/reductase [KO:K14446] [EC:1.3.1.85]
JHW44_03810  [KO:K14447] [EC:5.4.99.63]
JHW44_04140  [KO:K01091] [EC:3.1.3.18]
JHW44_04395  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
JHW44_04515  [KO:K00127]
JHW44_04520  [KO:K00124]
JHW44_04525  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
JHW44_04535  [KO:K00126] [EC:1.17.1.9]
JHW44_05045  [KO:K00626] [EC:2.3.1.9]
JHW44_05285  [KO:K00015] [EC:1.1.1.26]
JHW44_05695  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
JHW44_06125  [KO:K01091] [EC:3.1.3.18]
JHW44_06150  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JHW44_07655  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
JHW44_08025  [KO:K14449] [EC:4.2.1.148]
JHW44_08040  [KO:K14451] [EC:3.1.2.30]
JHW44_08050  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JHW44_08090  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JHW44_08260  [KO:K01915] [EC:6.3.1.2]
JHW44_08305  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
JHW44_08445  [KO:K17865] [EC:4.2.1.55]
JHW44_08525  [KO:K01966] [EC:6.4.1.3 2.1.3.15]
JHW44_08550  [KO:K01965] [EC:6.4.1.3]
JHW44_08565  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
JHW44_08730  [KO:K12972] [EC:1.1.1.79 1.1.1.81]
JHW44_08875  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
JHW44_08880  [KO:K11472] [EC:1.1.99.14]
JHW44_08885  [KO:K00104] [EC:1.1.99.14]
JHW44_08995  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
JHW44_09545  [KO:K00600] [EC:2.1.2.1]
JHW44_10240  [KO:K08691] [EC:4.1.3.24 4.1.3.25]
JHW44_10975  acnA; aconitate hydratase AcnA [KO:K27802]
JHW44_11240  [KO:K00626] [EC:2.3.1.9]
JHW44_11650  [KO:K12972] [EC:1.1.1.79 1.1.1.81]
JHW44_11860  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
JHW44_13455  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
JHW44_13460  gcvH; glycine cleavage system protein GcvH [KO:K02437]
JHW44_13465  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
JHW44_13695  [KO:K01915] [EC:6.3.1.2]
JHW44_14180  [KO:K00626] [EC:2.3.1.9]
JHW44_14190  [KO:K01895] [EC:6.2.1.1]
JHW44_14460  [KO:K00600] [EC:2.1.2.1]
JHW44_14660  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JHW44_15470  [KO:K01455] [EC:3.5.1.49]
JHW44_15540  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
JHW44_16595  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
JHW44_16710  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
JHW44_17210  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
JHW44_17610  [KO:K07248] [EC:1.2.1.22 1.2.1.21]
JHW44_17685  [KO:K01895] [EC:6.2.1.1]
JHW44_17695  [KO:K00626] [EC:2.3.1.9]
JHW44_18170  [KO:K11529] [EC:2.7.1.165]
JHW44_18335  [KO:K03780] [EC:4.2.1.32]
JHW44_18340  [KO:K03779] [EC:4.2.1.32]
JHW44_19365  [KO:K12972] [EC:1.1.1.79 1.1.1.81]
JHW44_19400  [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
JHW44_19440  [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00049  L-Aspartate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C05840  Iminoaspartate
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C19838  D-erythro-3-Hydroxyaspartate
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
psew00010  Glycolysis / Gluconeogenesis
psew00020  Citrate cycle (TCA cycle)
psew00030  Pentose phosphate pathway
psew00053  Ascorbate and aldarate metabolism
psew00071  Fatty acid degradation
psew00230  Purine metabolism
psew00250  Alanine, aspartate and glutamate metabolism
psew00260  Glycine, serine and threonine metabolism
psew00270  Cysteine and methionine metabolism
psew00620  Pyruvate metabolism
psew00710  Carbon fixation by Calvin cycle
psew00750  Vitamin B6 metabolism
psew00910  Nitrogen metabolism
KO pathway
ko00630   

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