KEGG   PATHWAY: psih00020
Entry
psih00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas sichuanensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
psih00020  Citrate cycle (TCA cycle)
psih00020

Module
psih_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:psih00020]
psih_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:psih00020]
psih_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:psih00020]
psih_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:psih00020]
psih_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:psih00020]
Other DBs
GO: 0006099
Organism
Pseudomonas sichuanensis [GN:psih]
Gene
LOY51_18780  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
LOY51_08885  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
LOY51_09995  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
LOY51_17345  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LOY51_17350  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LOY51_18755  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LOY51_18750  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LOY51_18745  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LOY51_19595  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LOY51_26745  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LOY51_18735  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LOY51_18740  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LOY51_00555  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
LOY51_18765  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LOY51_18760  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LOY51_18775  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
LOY51_18770  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
LOY51_22205  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LOY51_21695  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LOY51_07265  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LOY51_10405  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LOY51_17555  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
LOY51_20330  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
LOY51_22795  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
LOY51_08920  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
LOY51_26640  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
LOY51_26635  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
LOY51_01425  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
LOY51_01930  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
LOY51_04820  mdeB; alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
LOY51_23880  acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit [KO:K00627] [EC:2.3.1.12]
LOY51_01925  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
psih00010  Glycolysis / Gluconeogenesis
psih00053  Ascorbate and aldarate metabolism
psih00061  Fatty acid biosynthesis
psih00071  Fatty acid degradation
psih00190  Oxidative phosphorylation
psih00220  Arginine biosynthesis
psih00250  Alanine, aspartate and glutamate metabolism
psih00280  Valine, leucine and isoleucine degradation
psih00350  Tyrosine metabolism
psih00470  D-Amino acid metabolism
psih00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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