KEGG   PATHWAY: psl00020
Entry
psl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pirellula staleyi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
psl00020  Citrate cycle (TCA cycle)
psl00020

Module
psl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:psl00020]
psl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:psl00020]
psl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:psl00020]
psl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:psl00020]
psl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:psl00020]
Other DBs
GO: 0006099
Organism
Pirellula staleyi [GN:psl]
Gene
Psta_1931  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Psta_3158  2-methylcitrate synthase/citrate synthase II [KO:K01659] [EC:2.3.3.5]
Psta_2259  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
Psta_0983  Isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
Psta_3895  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Psta_0805  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Psta_0806  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Psta_4325  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Psta_4326  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Psta_0865  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Psta_0866  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Psta_0864  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
Psta_0788  fumarate lyase [KO:K01679] [EC:4.2.1.2]
Psta_4330  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Psta_2726  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Psta_2290  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Psta_1553  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Psta_3897  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Psta_3898  catalytic domain of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
psl00010  Glycolysis / Gluconeogenesis
psl00053  Ascorbate and aldarate metabolism
psl00061  Fatty acid biosynthesis
psl00071  Fatty acid degradation
psl00190  Oxidative phosphorylation
psl00220  Arginine biosynthesis
psl00250  Alanine, aspartate and glutamate metabolism
psl00280  Valine, leucine and isoleucine degradation
psl00350  Tyrosine metabolism
psl00470  D-Amino acid metabolism
psl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system