KEGG   PATHWAY: psta00020
Entry
psta00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Providencia stuartii BE2467
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
psta00020  Citrate cycle (TCA cycle)
psta00020

Module
psta_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:psta00020]
psta_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:psta00020]
psta_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:psta00020]
psta_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:psta00020]
psta_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:psta00020]
Other DBs
GO: 0006099
Organism
Providencia stuartii BE2467 [GN:psta]
Gene
BGK56_18535  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BGK56_03425  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BGK56_06980  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BGK56_04785  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BGK56_18560  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BGK56_18565  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BGK56_06990  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BGK56_18575  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BGK56_18570  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BGK56_18550  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BGK56_18555  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BGK56_18540  succinate dehydrogenase cytochrome b556 large subunit [KO:K00241]
BGK56_18545  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BGK56_16035  fumarate reductase [KO:K00245] [EC:1.3.5.1]
BGK56_16030  fumarate reductase subunit C [KO:K00246]
BGK56_16025  fumarate reductase [KO:K00247]
BGK56_15745  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BGK56_03305  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BGK56_05325  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BGK56_15030  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BGK56_14940  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BGK56_12990  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BGK56_07000  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BGK56_06995  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
psta00010  Glycolysis / Gluconeogenesis
psta00053  Ascorbate and aldarate metabolism
psta00061  Fatty acid biosynthesis
psta00071  Fatty acid degradation
psta00190  Oxidative phosphorylation
psta00220  Arginine biosynthesis
psta00250  Alanine, aspartate and glutamate metabolism
psta00280  Valine, leucine and isoleucine degradation
psta00350  Tyrosine metabolism
psta00470  D-Amino acid metabolism
psta00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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