KEGG   PATHWAY: psts00020
Entry
psts00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Plautia stali symbiont
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
psts00020  Citrate cycle (TCA cycle)
psts00020

Module
psts_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:psts00020]
psts_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:psts00020]
psts_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:psts00020]
psts_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:psts00020]
psts_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:psts00020]
Other DBs
GO: 0006099
Organism
Plautia stali symbiont [GN:psts]
Gene
E05_08140  citrate synthase I [KO:K01647] [EC:2.3.3.1]
E05_16320  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
E05_02370  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
E05_36350  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
E05_08190  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
E05_08200  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
E05_02360  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
E05_08220  sucD; SucD protein [KO:K01902] [EC:6.2.1.5]
E05_08210  sucC; SucC protein [KO:K01903] [EC:6.2.1.5]
E05_08170  sdhA; SdhA protein [KO:K00239] [EC:1.3.5.1]
E05_08180  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
E05_08150  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
E05_08160  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
E05_11660  hydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit beta [KO:K01676] [EC:4.2.1.2]
E05_13290  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
E05_29610  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
E05_05520  malate/quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
E05_41450  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
E05_02340  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
E05_02350  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
psts00010  Glycolysis / Gluconeogenesis
psts00053  Ascorbate and aldarate metabolism
psts00061  Fatty acid biosynthesis
psts00071  Fatty acid degradation
psts00190  Oxidative phosphorylation
psts00220  Arginine biosynthesis
psts00250  Alanine, aspartate and glutamate metabolism
psts00280  Valine, leucine and isoleucine degradation
psts00350  Tyrosine metabolism
psts00470  D-Amino acid metabolism
psts00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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