KEGG   PATHWAY: pstw00020
Entry
pstw00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pantoea stewartii subsp. stewartii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pstw00020  Citrate cycle (TCA cycle)
pstw00020

Module
pstw_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pstw00020]
pstw_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pstw00020]
pstw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pstw00020]
pstw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pstw00020]
pstw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pstw00020]
Other DBs
GO: 0006099
Organism
Pantoea stewartii subsp. stewartii [GN:pstw]
Gene
DSJ_08295  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DSJ_14490  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
DSJ_06395  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
DSJ_10830  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DSJ_08320  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
DSJ_08325  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
DSJ_06380  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DSJ_08335  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DSJ_08330  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DSJ_08310  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DSJ_08315  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DSJ_08300  succinate dehydrogenase cytochrome b556 large subunit [KO:K00241]
DSJ_08305  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
DSJ_26060  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
DSJ_13540  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
DSJ_10980  hypothetical protein [KO:K01675] [EC:4.2.1.2]
DSJ_21680  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DSJ_26095  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
DSJ_01745  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
DSJ_01010  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
DSJ_06370  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DSJ_06375  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pstw00010  Glycolysis / Gluconeogenesis
pstw00053  Ascorbate and aldarate metabolism
pstw00061  Fatty acid biosynthesis
pstw00071  Fatty acid degradation
pstw00190  Oxidative phosphorylation
pstw00220  Arginine biosynthesis
pstw00250  Alanine, aspartate and glutamate metabolism
pstw00280  Valine, leucine and isoleucine degradation
pstw00350  Tyrosine metabolism
pstw00470  D-Amino acid metabolism
pstw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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