KEGG   PATHWAY: psuu00020
Entry
psuu00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Phytohabitans suffuscus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
psuu00020  Citrate cycle (TCA cycle)
psuu00020

Module
psuu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:psuu00020]
psuu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:psuu00020]
psuu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:psuu00020]
psuu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:psuu00020]
psuu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:psuu00020]
Other DBs
GO: 0006099
Organism
Phytohabitans suffuscus [GN:psuu]
Gene
Psuf_037990  hypothetical protein [KO:K01647] [EC:2.3.3.1]
Psuf_038000  hypothetical protein [KO:K01647] [EC:2.3.3.1]
Psuf_088700  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
Psuf_007070  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Psuf_041900  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
Psuf_044190  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
Psuf_013520  hypothetical protein [KO:K00382] [EC:1.8.1.4]
Psuf_088530  pdhD_2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Psuf_027370  oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Psuf_027380  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Psuf_041780  succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
Psuf_041770  sucC1; succinate--CoA ligase [ADP-forming] subunit beta 1 [KO:K01903] [EC:6.2.1.5]
Psuf_077250  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Psuf_024850  hypothetical protein [KO:K00239] [EC:1.3.5.1]
Psuf_077240  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
Psuf_024860  hypothetical protein [KO:K00240] [EC:1.3.5.1]
Psuf_077260  sdhC; succinate dehydrogenase [KO:K00241]
Psuf_029040  hypothetical protein [KO:K01676] [EC:4.2.1.2]
Psuf_029020  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Psuf_041880  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Psuf_025280  pckA; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
Psuf_014370  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
Psuf_013530  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Psuf_068710  porA; 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
Psuf_068700  pyruvate synthase subunit beta [KO:K00170] [EC:1.2.7.1]
Psuf_068720  pyruvate ferredoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
psuu00010  Glycolysis / Gluconeogenesis
psuu00053  Ascorbate and aldarate metabolism
psuu00061  Fatty acid biosynthesis
psuu00071  Fatty acid degradation
psuu00190  Oxidative phosphorylation
psuu00220  Arginine biosynthesis
psuu00250  Alanine, aspartate and glutamate metabolism
psuu00280  Valine, leucine and isoleucine degradation
psuu00350  Tyrosine metabolism
psuu00470  D-Amino acid metabolism
psuu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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