KEGG   PATHWAY: ptes00020
Entry
ptes00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Paralysiella testudinis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ptes00020  Citrate cycle (TCA cycle)
ptes00020

Module
ptes_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ptes00020]
ptes_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ptes00020]
ptes_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ptes00020]
ptes_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ptes00020]
Other DBs
GO: 0006099
Organism
Paralysiella testudinis [GN:ptes]
Gene
JQU52_08435  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
JQU52_10310  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
JQU52_13170  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
JQU52_08440  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
JQU52_08445  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
JQU52_08465  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JQU52_09760  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JQU52_11290  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JQU52_08515  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
JQU52_08510  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
JQU52_08420  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
JQU52_08425  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
JQU52_08410  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
JQU52_08415  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
JQU52_10320  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
JQU52_08400  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JQU52_11280  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
JQU52_11285  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ptes00010  Glycolysis / Gluconeogenesis
ptes00061  Fatty acid biosynthesis
ptes00071  Fatty acid degradation
ptes00190  Oxidative phosphorylation
ptes00220  Arginine biosynthesis
ptes00250  Alanine, aspartate and glutamate metabolism
ptes00280  Valine, leucine and isoleucine degradation
ptes00350  Tyrosine metabolism
ptes00470  D-Amino acid metabolism
ptes00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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