KEGG   PATHWAY: pti00020
Entry
pti00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Phaeodactylum tricornutum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pti00020  Citrate cycle (TCA cycle)
pti00020

Module
pti_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pti00020]
Other DBs
GO: 0006099
Organism
Phaeodactylum tricornutum [GN:pti]
Gene
PHATRDRAFT_30145  hypothetical protein [KO:K01647] [EC:2.3.3.1]
PHATRDRAFT_54477  ACL; atp-citrate synthase [KO:K01648] [EC:2.3.3.8]
PHATRDRAFT_29016  OGD1; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PHATRDRAFT_40430  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
PHATRDRAFT_30113  pDLDH1; lipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PHATRDRAFT_26432  DLDH; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PHATRDRAFT_42015  SCS-alpha; ligase succinate-coa ligase [KO:K01899] [EC:6.2.1.4 6.2.1.5]
PHATRDRAFT_26921  beta chain succinyl-coa synthetase synthetase [KO:K01900] [EC:6.2.1.4 6.2.1.5]
PHATR_41812  SDH1; succinate dehydrogenase flavoprotein [KO:K00234] [EC:1.3.5.1]
PHATRDRAFT_52539  SDH2; succinate dehydrogenase iron sulfur protein [KO:K00235] [EC:1.3.5.1]
PHATR_18516  succinate dehydrogenase cytochrome b subunit [KO:K00236]
PHATRDRAFT_19708  FUM1; precursor of fumarase fumarase [KO:K01676] [EC:4.2.1.2]
PHATRDRAFT_36139  Fum; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PHATRDRAFT_51297  MDH; hypothetical protein [KO:K00026] [EC:1.1.1.37]
PHATRDRAFT_30519  PYC1; precursor of carboxylase pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
PHATRDRAFT_49339  PYC2; precursor of carboxylase pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
PHATRDRAFT_55035  PDHA1; precursor of dehydrogenase pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
PHATRDRAFT_20183  PDHB1; precursor of dehydrogenase pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
PHATRDRAFT_bd1828  hypothetical protein [KO:K00627] [EC:2.3.1.12]
PHATRDRAFT_17401  DHLTA_1; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
PHATRDRAFT_13894  DHLTA_2; dihydrolipoamide acetyl transferase [KO:K00627] [EC:2.3.1.12]
PHATRDRAFT_23850  DHLTA_3; dihydrolipoamide acetyl transferase [KO:K00627] [EC:2.3.1.12]
PHATRDRAFT_38009  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pti00010  Glycolysis / Gluconeogenesis
pti00053  Ascorbate and aldarate metabolism
pti00061  Fatty acid biosynthesis
pti00062  Fatty acid elongation
pti00071  Fatty acid degradation
pti00190  Oxidative phosphorylation
pti00220  Arginine biosynthesis
pti00250  Alanine, aspartate and glutamate metabolism
pti00280  Valine, leucine and isoleucine degradation
pti00350  Tyrosine metabolism
pti00470  D-Amino acid metabolism
pti00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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