KEGG   PATHWAY: pve00020
Entry
pve00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pandoraea vervacti
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pve00020  Citrate cycle (TCA cycle)
pve00020

Module
pve_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pve00020]
pve_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pve00020]
pve_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pve00020]
pve_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pve00020]
pve_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pve00020]
Other DBs
GO: 0006099
Organism
Pandoraea vervacti [GN:pve]
Gene
UC34_12050  excisionase [KO:K01647] [EC:2.3.3.1]
UC34_09375  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
UC34_09330  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
UC34_15400  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
UC34_16660  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
UC34_19375  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
UC34_14535  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
UC34_14530  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
UC34_09945  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
UC34_14525  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
UC34_20960  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
UC34_20965  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
UC34_15895  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
UC34_09360  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
UC34_09365  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
UC34_09350  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
UC34_09355  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
UC34_04900  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
UC34_24320  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
UC34_09340  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
UC34_12570  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
UC34_00800  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
UC34_09930  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
UC34_09935  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pve00010  Glycolysis / Gluconeogenesis
pve00053  Ascorbate and aldarate metabolism
pve00061  Fatty acid biosynthesis
pve00071  Fatty acid degradation
pve00190  Oxidative phosphorylation
pve00220  Arginine biosynthesis
pve00250  Alanine, aspartate and glutamate metabolism
pve00280  Valine, leucine and isoleucine degradation
pve00350  Tyrosine metabolism
pve00470  D-Amino acid metabolism
pve00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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