KEGG   PATHWAY: pvk00020
Entry
pvk00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas viciae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pvk00020  Citrate cycle (TCA cycle)
pvk00020

Module
pvk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pvk00020]
pvk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pvk00020]
pvk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pvk00020]
pvk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pvk00020]
pvk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pvk00020]
Other DBs
GO: 0006099
Organism
Pseudomonas viciae [GN:pvk]
Gene
EPZ47_21005  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
EPZ47_09425  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
EPZ47_12500  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EPZ47_18160  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EPZ47_18170  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EPZ47_20980  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
EPZ47_20975  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
EPZ47_12080  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EPZ47_20970  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EPZ47_29735  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EPZ47_20960  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
EPZ47_20965  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
EPZ47_00625  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
EPZ47_20990  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EPZ47_20985  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EPZ47_21000  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
EPZ47_20995  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
EPZ47_23720  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
EPZ47_08310  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EPZ47_04460  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EPZ47_14200  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
EPZ47_24740  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
EPZ47_29590  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
EPZ47_29585  oadA; oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
EPZ47_01320  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
EPZ47_02400  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
EPZ47_13930  acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit [KO:K00627] [EC:2.3.1.12]
EPZ47_02395  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pvk00010  Glycolysis / Gluconeogenesis
pvk00053  Ascorbate and aldarate metabolism
pvk00061  Fatty acid biosynthesis
pvk00071  Fatty acid degradation
pvk00190  Oxidative phosphorylation
pvk00220  Arginine biosynthesis
pvk00250  Alanine, aspartate and glutamate metabolism
pvk00280  Valine, leucine and isoleucine degradation
pvk00350  Tyrosine metabolism
pvk00470  D-Amino acid metabolism
pvk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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