KEGG   PATHWAY: pvw02025
Entry
pvw02025                    Pathway                                
Name
Biofilm formation - Pseudomonas aeruginosa - Pseudomonas vanderleydeniana
Description
Surface colonization and subsequent biofilm formation and development provide numerous advantages to microorganisms. The main key actors relevant in the regulation of biofilm formation by Pseudomonas aeruginosa include cAMP/Vfr signaling, quorum sensing (QS) systems, Gac/Rsm pathway, and c-di-GMP signaling. cAMP/Vfr signaling regulates the transcription of hundreds of genes encoding diverse virulence factors, including the type 2 secretion system and type 3 secretion system and their associated toxins, type IV pili, and flagella. It is demonstrated that the accumulation of cAMP inhibits the attachment phase of biofilm formation. The QS systems are arranged hierarchically with the las system positively regulating both the rhl and PQS systems. These three QS systems are involved in the regulation of virulence factor production, biofilm maturation, and motility phenotypes. GacS/GacA two-component system is promoting the expression of two small regulatory RNAs, RsmY and RsmZ, which sequester the translational repressor RsmA. Titration of RsmA induces the production of sessile and biofilm determinants, whereas free RsmA leads to a planktonic and more virulent lifestyle. c-di-GMP is a ubiquitous bacterial second messenger. Synthesis and degradation of c-di-GMP is facilitated by diguanylate cyclases (DGC) and phosphodiesterases (PDE). High intracellular levels of c-di-GMP evoke the processes leading to the production of biofilm matrix, while a decrease in its level causes an increase in cell motility and transition into the planktonic forms of growth.
Class
Cellular Processes; Cellular community - prokaryotes
Pathway map
pvw02025  Biofilm formation - Pseudomonas aeruginosa
pvw02025

Organism
Pseudomonas vanderleydeniana [GN:pvw]
Gene
HU752_030640  type IV pili methyl-accepting chemotaxis transducer N-terminal domain-containing protein [KO:K02660]
HU752_030645  chemotaxis protein CheW [KO:K02659]
HU752_030635  Hpt domain-containing protein [KO:K06596]
HU752_030630  chemotaxis protein CheW [KO:K06598]
HU752_030650  pilH; twitching motility response regulator PilH [KO:K02658]
HU752_030655  pilG; twitching motility response regulator PilG [KO:K02657]
HU752_003500  cpdA; 3',5'-cyclic-AMP phosphodiesterase [KO:K03651] [EC:3.1.4.53]
HU752_014535  phosphodiesterase [KO:K03651] [EC:3.1.4.53]
HU752_001950  Crp/Fnr family transcriptional regulator [KO:K10914]
HU752_029580  crp; cAMP-activated global transcriptional regulator CRP [KO:K10914]
HU752_008570  cyclic nucleotide-binding domain-containing protein [KO:K10914]
HU752_009120  sigma-54 dependent transcriptional regulator [KO:K10941]
HU752_023370  GNAT family N-acetyltransferase [KO:K13061] [EC:2.3.1.184]
HU752_023375  autoinducer binding domain-containing protein [KO:K18099]
HU752_030375  alpha/beta hydrolase [KO:K18100] [EC:2.4.1.-]
HU752_029605  trpE; anthranilate synthase component I [KO:K01657] [EC:4.1.3.27]
HU752_029600  aminodeoxychorismate/anthranilate synthase component II [KO:K01658] [EC:4.1.3.27]
HU752_025775  response regulator [KO:K07678] [EC:2.7.13.3]
HU752_004695  response regulator [KO:K20971]
HU752_004015  response regulator [KO:K20972]
HU752_022280  uvrY; UvrY/SirA/GacA family response regulator transcription factor [KO:K07689]
HU752_009615  csrA; carbon storage regulator CsrA [KO:K03563]
HU752_021210  csrA; carbon storage regulator CsrA [KO:K03563]
HU752_026025  csrA; carbon storage regulator CsrA [KO:K03563]
HU752_024000  response regulator [KO:K20973] [EC:2.7.13.3]
HU752_025220  response regulator [KO:K20974] [EC:2.7.13.3]
HU752_009175  Hpt domain-containing protein [KO:K20976]
HU752_009170  SpoIIE family protein phosphatase [KO:K20977]
HU752_009165  STAS domain-containing protein [KO:K20978]
HU752_025915  flgM; flagellar biosynthesis anti-sigma factor FlgM [KO:K02398]
HU752_009240  RNA polymerase sigma factor FliA [KO:K02405]
HU752_000280  serine/threonine-protein kinase [KO:K11912] [EC:2.7.11.1]
HU752_000285  serine/threonine-protein phosphatase [KO:K11915] [EC:3.1.3.16]
HU752_000290  tagF; type VI secretion system-associated protein TagF [KO:K11890]
HU752_000295  tssM; type VI secretion system membrane subunit TssM [KO:K11891]
HU752_011890  tssM; type VI secretion system membrane subunit TssM [KO:K11891]
HU752_000305  tssK; type VI secretion system baseplate subunit TssK [KO:K11893]
HU752_011805  tssK; type VI secretion system baseplate subunit TssK [KO:K11893]
HU752_000315  tagH; type VI secretion system-associated FHA domain protein TagH [KO:K11913]
HU752_000320  tssA; type VI secretion system protein TssA [KO:K11902]
HU752_000325  tssB; type VI secretion system contractile sheath small subunit [KO:K11901]
HU752_011835  tssB; type VI secretion system contractile sheath small subunit [KO:K11901]
HU752_000330  tssC; type VI secretion system contractile sheath large subunit [KO:K11900]
HU752_011830  tssC; type VI secretion system contractile sheath large subunit [KO:K11900]
HU752_000335  type VI secretion system tube protein Hcp [KO:K11903]
HU752_011795  Hcp family type VI secretion system effector [KO:K11903]
HU752_000350  tssG; type VI secretion system baseplate subunit TssG [KO:K11895]
HU752_011815  tssG; type VI secretion system baseplate subunit TssG [KO:K11895]
HU752_000355  tssH; type VI secretion system ATPase TssH [KO:K11907]
HU752_006695  methyl-accepting chemotaxis protein [KO:K13487]
HU752_006715  hybrid sensor histidine kinase/response regulator [KO:K13490]
HU752_006700  chemotaxis protein CheW [KO:K13488]
HU752_006710  chemotaxis protein CheW [KO:K13489]
HU752_006720  chemotaxis response regulator protein-glutamate methylesterase [KO:K13491] [EC:3.1.1.61]
HU752_006725  PleD family two-component system response regulator [KO:K11444] [EC:2.7.7.65]
HU752_008095  GGDEF domain-containing protein [KO:K21019] [EC:2.7.7.65]
HU752_004395  diguanylate cyclase [KO:K21021] [EC:2.7.7.65]
HU752_018395  EAL domain-containing protein [KO:K21023] [EC:2.7.7.65]
HU752_007110  EAL domain-containing protein [KO:K21024] [EC:3.1.4.52]
HU752_010130  undecaprenyl-phosphate glucose phosphotransferase [KO:K20997]
HU752_010125  mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase [KO:K16011] [EC:2.7.7.13 5.3.1.8]
HU752_027485  mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase [KO:K16011] [EC:2.7.7.13 5.3.1.8]
HU752_010120  polysaccharide export protein [KO:K20987]
HU752_010115  lipopolysaccharide biosynthesis protein [KO:K20998]
HU752_010110  glycosyltransferase [KO:K20999]
HU752_010105  cellulase family glycosylhydrolase [KO:K21000]
HU752_010100  glycosyltransferase family 4 protein [KO:K21001]
HU752_010095  glycosyltransferase family 4 protein [KO:K21002]
HU752_010090  O-antigen ligase family protein [KO:K21003]
HU752_010080  murein biosynthesis integral membrane protein MurJ [KO:K21004]
HU752_027440  alginate biosynthesis protein Alg44 [KO:K19291] [EC:2.4.1.33]
HU752_003545  molecular chaperone [KO:K23127]
Compound
C00044  GTP
C00575  3',5'-Cyclic AMP
C11837  N-Butyryl-L-homoserine lactone
C11848  2-Heptyl-3-hydroxy-quinolone
C16463  3',5'-Cyclic diGMP
C18076  5'-Phosphoguanylyl(3'->5')guanosine
C20643  2-Heptyl-4(1H)-quinolone
C21201  N-3-Oxo-dodecanoyl-L-homoserine lactone
Reference
  Authors
Coggan KA, Wolfgang MC
  Title
Global regulatory pathways and cross-talk control pseudomonas aeruginosa environmental lifestyle and virulence phenotype.
  Journal
Curr Issues Mol Biol 14:47-70 (2012)
Reference
  Authors
Rasamiravaka T, Labtani Q, Duez P, El Jaziri M
  Title
The formation of biofilms by Pseudomonas aeruginosa: a review of the natural and synthetic compounds interfering with control mechanisms.
  Journal
Biomed Res Int 2015:759348 (2015)
DOI:10.1155/2015/759348
Reference
  Authors
Valentini M, Filloux A
  Title
Biofilms and Cyclic di-GMP (c-di-GMP) Signaling: Lessons from Pseudomonas aeruginosa and Other Bacteria.
  Journal
J Biol Chem 291:12547-55 (2016)
DOI:10.1074/jbc.R115.711507
Reference
  Authors
Hengge R
  Title
Principles of c-di-GMP signalling in bacteria.
  Journal
Nat Rev Microbiol 7:263-73 (2009)
DOI:10.1038/nrmicro2109
Reference
  Authors
Liang ZX
  Title
The expanding roles of c-di-GMP in the biosynthesis of exopolysaccharides and secondary metabolites.
  Journal
Nat Prod Rep 32:663-83 (2015)
DOI:10.1039/c4np00086b
Reference
  Authors
Fulcher NB, Holliday PM, Klem E, Cann MJ, Wolfgang MC
  Title
The Pseudomonas aeruginosa Chp chemosensory system regulates intracellular cAMP levels by modulating adenylate cyclase activity.
  Journal
Mol Microbiol 76:889-904 (2010)
DOI:10.1111/j.1365-2958.2010.07135.x
Reference
  Authors
Marsden AE, Intile PJ, Schulmeyer KH, Simmons-Patterson ER, Urbanowski ML, Wolfgang MC, Yahr TL
  Title
Vfr Directly Activates exsA Transcription To Regulate Expression of the Pseudomonas aeruginosa Type III Secretion System.
  Journal
J Bacteriol 198:1442-50 (2016)
DOI:10.1128/JB.00049-16
Reference
  Authors
Brencic A, Lory S
  Title
Determination of the regulon and identification of novel mRNA targets of Pseudomonas aeruginosa RsmA.
  Journal
Mol Microbiol 72:612-32 (2009)
DOI:10.1111/j.1365-2958.2009.06670.x
Reference
  Authors
Hsu JL, Chen HC, Peng HL, Chang HY
  Title
Characterization of the histidine-containing phosphotransfer protein B-mediated multistep phosphorelay system in Pseudomonas aeruginosa PAO1.
  Journal
J Biol Chem 283:9933-44 (2008)
DOI:10.1074/jbc.M708836200
Reference
  Authors
Guvener ZT, Harwood CS
  Title
Subcellular location characteristics of the Pseudomonas aeruginosa GGDEF protein, WspR, indicate that it produces cyclic-di-GMP in response to growth on surfaces.
  Journal
Mol Microbiol 66:1459-73 (2007)
DOI:10.1111/j.1365-2958.2007.06008.x
Reference
  Authors
Irie Y, Starkey M, Edwards AN, Wozniak DJ, Romeo T, Parsek MR
  Title
Pseudomonas aeruginosa biofilm matrix polysaccharide Psl is regulated transcriptionally by RpoS and post-transcriptionally by RsmA.
  Journal
Mol Microbiol 78:158-72 (2010)
DOI:10.1111/j.1365-2958.2010.07320.x
Related
pathway
pvw02024  Quorum sensing
pvw02040  Flagellar assembly
pvw03070  Bacterial secretion system
KO pathway
ko02025   
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