KEGG   PATHWAY: pxn00020
Entry
pxn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas xantholysinigenes
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pxn00020  Citrate cycle (TCA cycle)
pxn00020

Module
pxn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pxn00020]
pxn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pxn00020]
pxn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pxn00020]
pxn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pxn00020]
pxn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pxn00020]
Other DBs
GO: 0006099
Organism
Pseudomonas xantholysinigenes [GN:pxn]
Gene
HU772_016395  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HU772_008150  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
HU772_008985  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HU772_009965  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HU772_015310  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HU772_016370  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HU772_016365  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HU772_016360  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HU772_017385  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HU772_024755  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HU772_016350  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HU772_016355  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HU772_024215  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
HU772_016380  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HU772_016375  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HU772_016390  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HU772_016385  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
HU772_004990  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HU772_006715  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HU772_020085  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HU772_008185  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
HU772_011825  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
HU772_018205  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
HU772_020915  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
HU772_024645  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
HU772_024640  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
HU772_001150  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
HU772_012390  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HU772_001820  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HU772_004525  mdeB; alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
HU772_001815  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pxn00010  Glycolysis / Gluconeogenesis
pxn00053  Ascorbate and aldarate metabolism
pxn00061  Fatty acid biosynthesis
pxn00071  Fatty acid degradation
pxn00190  Oxidative phosphorylation
pxn00220  Arginine biosynthesis
pxn00250  Alanine, aspartate and glutamate metabolism
pxn00280  Valine, leucine and isoleucine degradation
pxn00350  Tyrosine metabolism
pxn00470  D-Amino acid metabolism
pxn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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