KEGG   PATHWAY: rah00020
Entry
rah00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rahnella aceris Y9602
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rah00020  Citrate cycle (TCA cycle)
rah00020

Module
rah_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rah00020]
rah_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rah00020]
rah_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rah00020]
rah_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rah00020]
rah_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rah00020]
Other DBs
GO: 0006099
Organism
Rahnella aceris Y9602 [GN:rah]
Gene
Rahaq_3154  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Rahaq_2603  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Rahaq_3692  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Rahaq_2919  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Rahaq_3149  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Rahaq_3148  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Rahaq_3703  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Rahaq_3146  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Rahaq_3147  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Rahaq_3151  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Rahaq_3150  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Rahaq_3153  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
Rahaq_3152  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
Rahaq_0413  fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
Rahaq_0412  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
Rahaq_0411  fumarate reductase subunit C [KO:K00246]
Rahaq_0410  fumarate reductase D subunit [KO:K00247]
Rahaq_5029  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01676] [EC:4.2.1.2]
Rahaq_2205  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
Rahaq_0465  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Rahaq_0126  malate/quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Rahaq_0133  malate/quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Rahaq_0256  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Rahaq_3705  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Rahaq_3704  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Rahaq_2080  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rah00010  Glycolysis / Gluconeogenesis
rah00053  Ascorbate and aldarate metabolism
rah00061  Fatty acid biosynthesis
rah00071  Fatty acid degradation
rah00190  Oxidative phosphorylation
rah00220  Arginine biosynthesis
rah00250  Alanine, aspartate and glutamate metabolism
rah00280  Valine, leucine and isoleucine degradation
rah00350  Tyrosine metabolism
rah00470  D-Amino acid metabolism
rah00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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