KEGG   PATHWAY: rao00020
Entry
rao00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Raoultella sp. X13
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rao00020  Citrate cycle (TCA cycle)
rao00020

Module
rao_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rao00020]
rao_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rao00020]
rao_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rao00020]
rao_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rao00020]
rao_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rao00020]
Other DBs
GO: 0006099
Organism
Raoultella sp. X13 [GN:rao]
Gene
DSD31_19295  citrate synthase [KO:K01647] [EC:2.3.3.1]
DSD31_17935  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DSD31_14855  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
DSD31_21255  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
DSD31_15525  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DSD31_17900  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
DSD31_17895  2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
DSD31_21275  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DSD31_17885  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DSD31_17890  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DSD31_17910  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DSD31_17905  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DSD31_17920  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
DSD31_17915  succinate dehydrogenase membrane anchor subunit [KO:K00242]
DSD31_23630  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
DSD31_23635  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
DSD31_23640  fumarate reductase subunit FrdC [KO:K00246]
DSD31_23645  fumarate reductase subunit FrdD [KO:K00247]
DSD31_11670  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
DSD31_11865  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
DSD31_11675  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DSD31_10655  fumarate hydratase FumD [KO:K01675] [EC:4.2.1.2]
DSD31_02600  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DSD31_11905  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
DSD31_07755  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
DSD31_01905  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
DSD31_21290  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DSD31_21285  pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
DSD31_14255  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rao00010  Glycolysis / Gluconeogenesis
rao00053  Ascorbate and aldarate metabolism
rao00061  Fatty acid biosynthesis
rao00071  Fatty acid degradation
rao00190  Oxidative phosphorylation
rao00220  Arginine biosynthesis
rao00250  Alanine, aspartate and glutamate metabolism
rao00280  Valine, leucine and isoleucine degradation
rao00350  Tyrosine metabolism
rao00470  D-Amino acid metabolism
rao00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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