KEGG   PATHWAY: raq00020
Entry
raq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rahnella aquatilis CIP 78.65 = ATCC 33071
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
raq00020  Citrate cycle (TCA cycle)
raq00020

Module
raq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:raq00020]
raq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:raq00020]
raq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:raq00020]
raq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:raq00020]
raq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:raq00020]
Other DBs
GO: 0006099
Organism
Rahnella aquatilis CIP 78.65 = ATCC 33071 [GN:raq]
Gene
Rahaq2_3185  citrate synthase I, hexameric type [KO:K01647] [EC:2.3.3.1]
Rahaq2_2074  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
Rahaq2_3786  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Rahaq2_2944  isocitrate dehydrogenase, NADP-dependent, prokaryotic type [KO:K00031] [EC:1.1.1.42]
Rahaq2_3180  2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
Rahaq2_3179  2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Rahaq2_3799  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Rahaq2_3177  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Rahaq2_3178  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Rahaq2_3182  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Rahaq2_3181  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Rahaq2_3184  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
Rahaq2_3183  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
Rahaq2_0440  fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
Rahaq2_0439  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
Rahaq2_0438  fumarate reductase subunit C [KO:K00246]
Rahaq2_0437  fumarate reductase subunit D [KO:K00247]
Rahaq2_4904  hydro-lyase, Fe-S type, tartrate/fumarate subfamily,hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily [KO:K01676] [EC:4.2.1.2]
Rahaq2_2324  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
Rahaq2_0031  transcriptional regulator [KO:K01774] [EC:4.2.1.2]
Rahaq2_0492  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Rahaq2_0150  malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
Rahaq2_0160  malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
Rahaq2_0276  ATP-dependent phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Rahaq2_3801  pyruvate dehydrogenase E1 component, homodimeric type [KO:K00163] [EC:1.2.4.1]
Rahaq2_3800  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form [KO:K00627] [EC:2.3.1.12]
Rahaq2_5091  pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Rahaq2_2237  pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
raq00010  Glycolysis / Gluconeogenesis
raq00053  Ascorbate and aldarate metabolism
raq00061  Fatty acid biosynthesis
raq00071  Fatty acid degradation
raq00190  Oxidative phosphorylation
raq00220  Arginine biosynthesis
raq00250  Alanine, aspartate and glutamate metabolism
raq00280  Valine, leucine and isoleucine degradation
raq00350  Tyrosine metabolism
raq00470  D-Amino acid metabolism
raq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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