KEGG   PATHWAY: rbd00020
Entry
rbd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aerosticca soli
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rbd00020  Citrate cycle (TCA cycle)
rbd00020

Module
rbd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rbd00020]
rbd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rbd00020]
rbd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rbd00020]
rbd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rbd00020]
Other DBs
GO: 0006099
Organism
Aerosticca soli [GN:rbd]
Gene
ALSL_0660  citrate synthase [KO:K01647] [EC:2.3.3.1]
ALSL_2170  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
ALSL_0127  monomeric isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ALSL_1360  isocitrate dehydrogenase [NAD] [KO:K00030] [EC:1.1.1.41]
ALSL_0628  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
ALSL_0627  dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
ALSL_0846  dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
ALSL_0626  dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
ALSL_2304  succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
ALSL_2305  succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
ALSL_2001  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
ALSL_1909  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ALSL_1908  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
ALSL_1911  succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
ALSL_1910  succinate dehydrogenase hydrophobic membrane anc horprotein [KO:K00242]
ALSL_0760  fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
ALSL_0642  fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
ALSL_1627  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ALSL_2124  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
ALSL_0844  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rbd00010  Glycolysis / Gluconeogenesis
rbd00053  Ascorbate and aldarate metabolism
rbd00061  Fatty acid biosynthesis
rbd00071  Fatty acid degradation
rbd00190  Oxidative phosphorylation
rbd00220  Arginine biosynthesis
rbd00250  Alanine, aspartate and glutamate metabolism
rbd00280  Valine, leucine and isoleucine degradation
rbd00350  Tyrosine metabolism
rbd00470  D-Amino acid metabolism
rbd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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