KEGG   PATHWAY: rcf00020
Entry
rcf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rosistilla carotiformis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rcf00020  Citrate cycle (TCA cycle)
rcf00020

Module
rcf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rcf00020]
rcf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rcf00020]
rcf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rcf00020]
Other DBs
GO: 0006099
Organism
Rosistilla carotiformis [GN:rcf]
Gene
Poly24_35470  gltA2; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
Poly24_20280  acn; Aconitate hydratase precursor [KO:K01681] [EC:4.2.1.3]
Poly24_10210  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
Poly24_05710  kgd; Multifunctional 2-oxoglutarate metabolism enzyme [KO:K00164] [EC:1.2.4.2]
Poly24_28990  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
Poly24_02450  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Poly24_10610  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Poly24_35540  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Poly24_35530  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Poly24_21030  sucD_1; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
Poly24_21040  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
Poly24_44610  frdA; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Poly24_44620  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Poly24_44600  sdhC; Succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
Poly24_47530  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Poly24_07280  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Poly24_16690  cfiB; 2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
Poly24_24720  cfiA; 2-oxoglutarate carboxylase large subunit [KO:K01960] [EC:6.4.1.1]
Poly24_22680  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
Poly24_43390  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rcf00010  Glycolysis / Gluconeogenesis
rcf00053  Ascorbate and aldarate metabolism
rcf00061  Fatty acid biosynthesis
rcf00071  Fatty acid degradation
rcf00190  Oxidative phosphorylation
rcf00220  Arginine biosynthesis
rcf00250  Alanine, aspartate and glutamate metabolism
rcf00280  Valine, leucine and isoleucine degradation
rcf00350  Tyrosine metabolism
rcf00470  D-Amino acid metabolism
rcf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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