KEGG   PATHWAY: rct00020
Entry
rct00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rhizobium croatiense
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rct00020  Citrate cycle (TCA cycle)
rct00020

Module
rct_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rct00020]
rct_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rct00020]
rct_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rct00020]
rct_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rct00020]
Other DBs
GO: 0006099
Organism
Rhizobium croatiense [GN:rct]
Gene
PYR68_08245  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
PYR68_09295  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
PYR68_18720  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
PYR68_09910  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PYR68_18430  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PYR68_18420  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
PYR68_08305  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PYR68_18395  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PYR68_18435  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
PYR68_18440  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
PYR68_18470  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PYR68_18465  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PYR68_18480  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
PYR68_18475  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
PYR68_10240  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
PYR68_10225  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PYR68_18445  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PYR68_19020  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
PYR68_19860  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
PYR68_08280  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
PYR68_08285  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
PYR68_08290  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rct00010  Glycolysis / Gluconeogenesis
rct00053  Ascorbate and aldarate metabolism
rct00061  Fatty acid biosynthesis
rct00071  Fatty acid degradation
rct00190  Oxidative phosphorylation
rct00220  Arginine biosynthesis
rct00250  Alanine, aspartate and glutamate metabolism
rct00280  Valine, leucine and isoleucine degradation
rct00350  Tyrosine metabolism
rct00470  D-Amino acid metabolism
rct00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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