KEGG   PATHWAY: rdi00630
Entry
rdi00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhizorhabdus dicambivorans
Class
Metabolism; Carbohydrate metabolism
Pathway map
rdi00630  Glyoxylate and dicarboxylate metabolism
rdi00630

Module
rdi_M00012  Glyoxylate cycle [PATH:rdi00630]
rdi_M00621  Glycine cleavage system [PATH:rdi00630]
rdi_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rdi00630]
Other DBs
GO: 0046487 0043648
Organism
Rhizorhabdus dicambivorans [GN:rdi]
Gene
CMV14_02265  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
CMV14_04550  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
CMV14_22795  malate synthase G [KO:K01638] [EC:2.3.3.9]
CMV14_15840  malate synthase G [KO:K01638] [EC:2.3.3.9]
CMV14_08430  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CMV14_00460  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
CMV14_01305  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CMV14_01300  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CMV14_04645  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
CMV14_14170  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
CMV14_01120  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
CMV14_10040  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
CMV14_18865  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
CMV14_07235  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
CMV14_20710  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
CMV14_07550  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
CMV14_05700  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
CMV14_05955  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
CMV14_19505  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
CMV14_08150  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
CMV14_03740  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
CMV14_03855  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
CMV14_15415  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
CMV14_01115  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
CMV14_05495  hypothetical protein [KO:K05606] [EC:5.1.99.1]
CMV14_07525  CoA ester lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
CMV14_01100  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
CMV14_01125  methylmalonyl-CoA carboxyltransferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
CMV14_01110  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
CMV14_20060  FAD-binding oxidoreductase [KO:K00104] [EC:1.1.99.14]
CMV14_20065  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
CMV14_20070  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
CMV14_22970  catalase HPII [KO:K03781] [EC:1.11.1.6]
CMV14_10500  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
CMV14_01330  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
CMV14_10635  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
CMV14_10810  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
CMV14_09180  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
CMV14_03035  aminomethyl-transferring glycine dehydrogenase [KO:K00282] [EC:1.4.4.2]
CMV14_03030  glycine dehydrogenase subunit 2 [KO:K00283] [EC:1.4.4.2]
CMV14_03045  glycine cleavage system aminomethyltransferase T [KO:K00605] [EC:2.1.2.10]
CMV14_07915  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CMV14_08450  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CMV14_03040  gcvH; glycine cleavage system protein H [KO:K02437]
CMV14_04970  kinase [KO:K15918] [EC:2.7.1.31]
CMV14_16875  kinase [KO:K15918] [EC:2.7.1.31]
CMV14_01085  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
CMV14_20220  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
CMV14_20225  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
CMV14_20230  formate dehydrogenase [KO:K00124]
CMV14_20235  NADH-quinone oxidoreductase subunit E [KO:K00127]
CMV14_09875  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
CMV14_00765  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
CMV14_09645  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
CMV14_07275  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
CMV14_16130  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
CMV14_12640  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
CMV14_03810  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
CMV14_14335  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rdi00010  Glycolysis / Gluconeogenesis
rdi00020  Citrate cycle (TCA cycle)
rdi00030  Pentose phosphate pathway
rdi00053  Ascorbate and aldarate metabolism
rdi00071  Fatty acid degradation
rdi00230  Purine metabolism
rdi00250  Alanine, aspartate and glutamate metabolism
rdi00260  Glycine, serine and threonine metabolism
rdi00620  Pyruvate metabolism
rdi00710  Carbon fixation by Calvin cycle
rdi00750  Vitamin B6 metabolism
rdi00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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