KEGG   PATHWAY: rdi00010
Entry
rdi00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Rhizorhabdus dicambivorans
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rdi00010  Glycolysis / Gluconeogenesis
rdi00010

Module
rdi_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:rdi00010]
rdi_M00002  Glycolysis, core module involving three-carbon compounds [PATH:rdi00010]
rdi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rdi00010]
rdi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rdi00010]
Other DBs
GO: 0006096 0006094
Organism
Rhizorhabdus dicambivorans [GN:rdi]
Gene
CMV14_01080  glucokinase [KO:K00845] [EC:2.7.1.2]
CMV14_02990  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
CMV14_00835  ATP-dependent 6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
CMV14_15520  glpX; fructose-bisphosphatase class II [KO:K11532] [EC:3.1.3.11 3.1.3.37]
CMV14_02715  fructose bisphosphate aldolase [KO:K01623] [EC:4.1.2.13]
CMV14_23325  triose-phosphate isomerase [KO:K01803] [EC:5.3.1.1]
CMV14_02740  gap; type I glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
CMV14_02730  pgk; phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
CMV14_02605  2,3-diphosphoglycerate-dependent phosphoglycerate mutase [KO:K01834] [EC:5.4.2.11]
CMV14_26180  histidine phosphatase family protein [KO:K15634] [EC:5.4.2.11]
CMV14_26335  histidine phosphatase family protein [KO:K15634] [EC:5.4.2.11]
CMV14_13515  phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
CMV14_03090  pyk; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
CMV14_10925  pyruvate, phosphate dikinase [KO:K01006] [EC:2.7.9.1]
CMV14_05265  phosphoenolpyruvate synthase [KO:K01007] [EC:2.7.9.2]
CMV14_09570  transketolase [KO:K00163] [EC:1.2.4.1]
CMV14_08925  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CMV14_08920  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
CMV14_07905  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
CMV14_07915  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CMV14_08450  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CMV14_00340  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CMV14_00335  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CMV14_04655  S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
CMV14_22730  alcohol dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
CMV14_10050  alcohol dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
CMV14_05305  zinc-binding alcohol dehydrogenase family protein [KO:K13953] [EC:1.1.1.1]
CMV14_24900  alcohol dehydrogenase AdhP [KO:K13953] [EC:1.1.1.1]
CMV14_24345  alcohol dehydrogenase AdhP [KO:K13953] [EC:1.1.1.1]
CMV14_08200  NAD(P)-dependent alcohol dehydrogenase [KO:K13953] [EC:1.1.1.1]
CMV14_09970  aldehyde dehydrogenase family protein [KO:K00128] [EC:1.2.1.3]
CMV14_16900  betaine-aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
CMV14_08190  aldehyde dehydrogenase family protein [KO:K00128] [EC:1.2.1.3]
CMV14_09730  aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
CMV14_09895  aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
CMV14_05915  aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
CMV14_20795  aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
CMV14_24895  aldehyde dehydrogenase [KO:K00138] [EC:1.2.1.-]
CMV14_19375  aldehyde dehydrogenase family protein [KO:K00138] [EC:1.2.1.-]
CMV14_12620  aldehyde dehydrogenase [KO:K00138] [EC:1.2.1.-]
CMV14_04550  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
CMV14_12315  alpha-D-glucose phosphate-specific phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
CMV14_13740  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rdi00020  Citrate cycle (TCA cycle)
rdi00030  Pentose phosphate pathway
rdi00500  Starch and sucrose metabolism
rdi00620  Pyruvate metabolism
rdi00640  Propanoate metabolism
rdi00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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