KEGG   PATHWAY: rel00020
Entry
rel00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rhizobium etli bv. mimosae Mim1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rel00020  Citrate cycle (TCA cycle)
rel00020

Module
rel_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rel00020]
rel_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rel00020]
rel_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rel00020]
rel_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rel00020]
Other DBs
GO: 0006099
Organism
Rhizobium etli bv. mimosae Mim1 [GN:rel]
Gene
REMIM1_CH02192  citrate synthase protein [KO:K01647] [EC:2.3.3.1]
REMIM1_CH02193  citA; citrate synthase [KO:K01647] [EC:2.3.3.1]
REMIM1_CH01984  gltA-1; citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
REMIM1_PF00913  gltA-2; citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
REMIM1_CH04037  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
REMIM1_CH02329  icd; isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
REMIM1_CH03981  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
REMIM1_CH03979  sucB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
REMIM1_CH01997  lpdA-1; dihydrolipoamide dehydrogenase 1 [KO:K00382] [EC:1.8.1.4]
REMIM1_PF00816  lpdA-2; dihydrolipoamide dehydrogenase 2 [KO:K00382] [EC:1.8.1.4]
REMIM1_PB00074  lpdV; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
REMIM1_CH03974  dihydrolipoamide dehydrogenase protein [KO:K00382] [EC:1.8.1.4]
REMIM1_CH03982  sucD; succinyl-CoA synthetase (ADP-forming) subunit alpha [KO:K01902] [EC:6.2.1.5]
REMIM1_CH03983  sucC; succinyl-CoA synthetase (ADP-forming) subunit beta [KO:K01903] [EC:6.2.1.5]
REMIM1_CH03988  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
REMIM1_CH03987  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
REMIM1_CH03990  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
REMIM1_CH03989  sdhD; succinate dehydrogenase SdhD subunit [KO:K00242]
REMIM1_CH02400  fumA; fumarate hydratase class 1 [KO:K01676] [EC:4.2.1.2]
REMIM1_CH02398  fumC; fumarate hydratase class 2 [KO:K01679] [EC:4.2.1.2]
REMIM1_CH03984  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
REMIM1_CH04099  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
REMIM1_CH00037  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
REMIM1_CH01992  pdhA; pyruvate dehydrogenase alpha subunit [KO:K00161] [EC:1.2.4.1]
REMIM1_CH01993  pdhB-1; pyruvate dehydrogenase subunit beta 1 [KO:K00162] [EC:1.2.4.1]
REMIM1_CH01994  pdhC-1; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex 1 [KO:K00627] [EC:2.3.1.12]
REMIM1_PF00817  pdhC-2; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex 2 [KO:K00627] [EC:2.3.1.12]
REMIM1_PF00857  acoC-1; dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system 1 [KO:K00627] [EC:2.3.1.12]
REMIM1_PF00870  acoC-2; dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system 2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rel00010  Glycolysis / Gluconeogenesis
rel00053  Ascorbate and aldarate metabolism
rel00061  Fatty acid biosynthesis
rel00071  Fatty acid degradation
rel00190  Oxidative phosphorylation
rel00220  Arginine biosynthesis
rel00250  Alanine, aspartate and glutamate metabolism
rel00280  Valine, leucine and isoleucine degradation
rel00350  Tyrosine metabolism
rel00470  D-Amino acid metabolism
rel00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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