KEGG   PATHWAY: rfl00630
Entry
rfl00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Roseomonas fluvialis
Class
Metabolism; Carbohydrate metabolism
Pathway map
rfl00630  Glyoxylate and dicarboxylate metabolism
rfl00630

Module
rfl_M00012  Glyoxylate cycle [PATH:rfl00630]
rfl_M00621  Glycine cleavage system [PATH:rfl00630]
Other DBs
GO: 0046487 0043648
Organism
Roseomonas fluvialis [GN:rfl]
Gene
Rmf_47770  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
Rmf_09490  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
Rmf_11360  acsA_1; AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
Rmf_17000  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
Rmf_49230  acsA_2; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
Rmf_13280  glcB; malate synthase G [KO:K01638] [EC:2.3.3.9]
Rmf_45770  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Rmf_11710  citrate synthase [KO:K01647] [EC:2.3.3.1]
Rmf_30130  citrate synthase [KO:K01647] [EC:2.3.3.1]
Rmf_06120  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Rmf_00130  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rmf_06850  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rmf_07030  phbA; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rmf_24690  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rmf_47120  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
Rmf_00420  phaJ; (R)-specific enoyl-CoA hydratase [KO:K17865] [EC:4.2.1.55]
Rmf_33860  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
Rmf_11920  glcD2; FAD-binding protein [KO:K00104] [EC:1.1.99.14]
Rmf_11930  2-hydroxy-acid oxidase [KO:K11472] [EC:1.1.99.14]
Rmf_28410  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
Rmf_34810  catalase-related peroxidase [KO:K03781] [EC:1.11.1.6]
Rmf_41340  katE; catalase [KO:K03781] [EC:1.11.1.6]
Rmf_23530  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
Rmf_17660  gph; phosphoglycolate phosphatase, bacterial [KO:K01091] [EC:3.1.3.18]
Rmf_24810  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
Rmf_21340  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
Rmf_44590  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
Rmf_12640  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Rmf_19370  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Rmf_36390  gcvP; glycine dehydrogenase (decarboxylating) [KO:K00281] [EC:1.4.4.2]
Rmf_36410  aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
Rmf_32170  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Rmf_44260  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Rmf_36400  gcvH; glycine cleavage system H protein [KO:K02437]
Rmf_06490  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
Rmf_27340  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
Rmf_27360  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
Rmf_10790  glycerate kinase [KO:K00865] [EC:2.7.1.165]
Rmf_28320  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
Rmf_30560  fumarate hydratase [KO:K03779] [EC:4.2.1.32]
Rmf_30580  L(+)-tartrate dehydratase subunit beta [KO:K03780] [EC:4.2.1.32]
Rmf_12010  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Rmf_20610  dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Rmf_27050  eda; 2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Rmf_09190  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
Rmf_09200  formate dehydrogenase [KO:K00124]
Rmf_09210  formate dehydrogenase [KO:K00127]
Rmf_29020  esterase [KO:K01432] [EC:3.5.1.9]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rfl00010  Glycolysis / Gluconeogenesis
rfl00020  Citrate cycle (TCA cycle)
rfl00030  Pentose phosphate pathway
rfl00053  Ascorbate and aldarate metabolism
rfl00071  Fatty acid degradation
rfl00230  Purine metabolism
rfl00250  Alanine, aspartate and glutamate metabolism
rfl00260  Glycine, serine and threonine metabolism
rfl00620  Pyruvate metabolism
rfl00710  Carbon fixation by Calvin cycle
rfl00750  Vitamin B6 metabolism
rfl00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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