KEGG   PATHWAY: rha00630
Entry
rha00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhodococcus jostii
Class
Metabolism; Carbohydrate metabolism
Pathway map
rha00630  Glyoxylate and dicarboxylate metabolism
rha00630

Module
rha_M00012  Glyoxylate cycle [PATH:rha00630]
rha_M00621  Glycine cleavage system [PATH:rha00630]
rha_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rha00630]
Other DBs
GO: 0046487 0043648
Organism
Rhodococcus jostii [GN:rha]
Gene
RHA1_ro02122  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
RHA1_ro02673  probable acetoacetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
RHA1_ro01619  acsA1; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
RHA1_ro10183  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
RHA1_ro08877  acsA3; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
RHA1_ro11190  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
RHA1_ro04332  acsA2; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
RHA1_ro08189  probable acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
RHA1_ro06598  probable acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
RHA1_ro00899  glcB; malate synthase G [KO:K01638] [EC:2.3.3.9]
RHA1_ro02564  malate synthase G [KO:K01638] [EC:2.3.3.9]
RHA1_ro06244  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RHA1_ro04993  citA2; citrate (Si) synthase [KO:K01647] [EC:2.3.3.1]
RHA1_ro04998  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
RHA1_ro08812  citA4; citrate (Si) synthase [KO:K01647] [EC:2.3.3.1]
RHA1_ro01610  possible citrate synthase, C-terminal [KO:K01647] [EC:2.3.3.1]
RHA1_ro06955  citrate synthase [KO:K01647] [EC:2.3.3.1]
RHA1_ro08450  citA3; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
RHA1_ro00355  citA1; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
RHA1_ro07207  acnA2; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
RHA1_ro08266  acnA3; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
RHA1_ro02399  acnA1; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
RHA1_ro02734  probable acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RHA1_ro04678  probable thiolase [KO:K00626] [EC:2.3.1.9]
RHA1_ro04683  probable nonspecific lipid carrier protein [KO:K00626] [EC:2.3.1.9]
RHA1_ro05200  probable thiolase [KO:K00626] [EC:2.3.1.9]
RHA1_ro05257  probable acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RHA1_ro01876  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RHA1_ro01455  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RHA1_ro01623  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RHA1_ro08871  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RHA1_ro02517  catF; acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RHA1_ro03892  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RHA1_ro04204  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
RHA1_ro05686  conserved hypothetical protein [KO:K00626] [EC:2.3.1.9]
RHA1_ro05815  probable thiolase [KO:K00626] [EC:2.3.1.9]
RHA1_ro06115  probable acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
RHA1_ro04599  probable acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RHA1_ro03391  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RHA1_ro03022  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RHA1_ro03024  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RHA1_ro00399  conserved hypothetical protein [KO:K00626] [EC:2.3.1.9]
RHA1_ro01340  pcaF; acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
RHA1_ro03460  probable acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RHA1_ro05841  probable beta-ketoadipyl CoA thiolase [KO:K00626] [EC:2.3.1.9]
RHA1_ro01456  possible methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
RHA1_ro03742  acetyl/propionyl-CoA carboxylase alpha subunit [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
RHA1_ro08921  biotin carboxylase [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
RHA1_ro06282  acetyl/propionyl-CoA carboxylase alpha subunit [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
RHA1_ro06292  acetyl/propionyl-CoA carboxylase beta subunit [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
RHA1_ro03744  propionyl-CoA carboxylase beta subunit [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
RHA1_ro08919  pccB2; propionyl-CoA carboxylase beta subunit [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
RHA1_ro06291  conserved hypothetical protein [KO:K27095]
RHA1_ro01202  pccB1; propionyl-CoA carboxylase beta subunit [KO:K18472] [EC:6.4.1.2 6.4.1.3 2.1.3.15]
RHA1_ro07234  mutB; methylmalonyl-CoA mutase large subunit [KO:K01847] [EC:5.4.99.2]
RHA1_ro07233  mutA; methylmalonyl-CoA mutase small subunit [KO:K01847] [EC:5.4.99.2]
RHA1_ro01589  probable glycolate oxidase FAD-linked subunit [KO:K00104] [EC:1.1.99.14]
RHA1_ro00450  probable glycolate oxidase FAD-linked subunit [KO:K00104] [EC:1.1.99.14]
RHA1_ro02984  probable glycolate oxidase subunit [KO:K00104] [EC:1.1.99.14]
RHA1_ro03227  probable glycolate oxidase FAD-linked subunit [KO:K00104] [EC:1.1.99.14]
RHA1_ro03387  FAD-binding oxidoreductase [KO:K00104] [EC:1.1.99.14]
RHA1_ro03236  probable D-lactate dehydrogenase (cytochrome) [KO:K00104] [EC:1.1.99.14]
RHA1_ro08262  catalase [KO:K03781] [EC:1.11.1.6]
RHA1_ro00439  katA; catalase [KO:K03781] [EC:1.11.1.6]
RHA1_ro03419  catalase [KO:K03781] [EC:1.11.1.6]
RHA1_ro04309  catalase [KO:K03781] [EC:1.11.1.6]
RHA1_ro05836  catalase [KO:K03781] [EC:1.11.1.6]
RHA1_ro05938  catalase [KO:K03781] [EC:1.11.1.6]
RHA1_ro00603  catalase [KO:K03781] [EC:1.11.1.6]
RHA1_ro04923  probable glyoxylate reductase [KO:K00015] [EC:1.1.1.26]
RHA1_ro02900  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
RHA1_ro01185  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
RHA1_ro01157  glnA1; glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
RHA1_ro05312  glnA4; glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
RHA1_ro02820  glnA3; glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
RHA1_ro01167  glnA2; glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
RHA1_ro01721  probable glutamine synthetase [KO:K01915] [EC:6.3.1.2]
RHA1_ro05335  glyA3; glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
RHA1_ro01820  glyA1; glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
RHA1_ro02933  glyA2; glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
RHA1_ro05859  glyA4; glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
RHA1_ro00902  gcvP1; glycine dehydrogenase (decarboxylating) [KO:K00281] [EC:1.4.4.2]
RHA1_ro02930  gcvP2; glycine dehydrogenase (decarboxylating) [KO:K00281] [EC:1.4.4.2]
RHA1_ro08467  gcvPa; glycine dehydrogenase (decarboxylating) subunit 1 [KO:K00282] [EC:1.4.4.2]
RHA1_ro08466  gcvPb; glycine dehydrogenase (decarboxylating) subunit 2 [KO:K00283] [EC:1.4.4.2]
RHA1_ro01148  gcvT1; aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
RHA1_ro02931  gcvT2; aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
RHA1_ro02140  dldH1; dihydrolipoyl dehydrogenanse [KO:K00382] [EC:1.8.1.4]
RHA1_ro11024  lpdA; dihydrolipoyl dehydrogenanse [KO:K00382] [EC:1.8.1.4]
RHA1_ro02927  dldH2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RHA1_ro03377  dldH4; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RHA1_ro03318  dldH3; dihydrolipoyl dehydrogenanse [KO:K00382] [EC:1.8.1.4]
RHA1_ro00907  gcvH; glycine cleavage system H protein [KO:K02437]
RHA1_ro02932  glycine cleavage system, H protein [KO:K02437]
RHA1_ro01827  glycine cleavage system H protein [KO:K02437]
RHA1_ro03223  probable tartronate-semialdehyde synthase [KO:K01608] [EC:4.1.1.47]
RHA1_ro02574  tartronate-semialdehyde synthase [KO:K01608] [EC:4.1.1.47]
RHA1_ro02576  probable hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
RHA1_ro05268  probable hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
RHA1_ro03225  probable hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
RHA1_ro02575  probable 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
RHA1_ro03224  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
RHA1_ro01141  glycerate kinase [KO:K00865] [EC:2.7.1.165]
RHA1_ro04801  glycerate kinase [KO:K00865] [EC:2.7.1.165]
RHA1_ro04922  glycerate kinase [KO:K00865] [EC:2.7.1.165]
RHA1_ro03229  glycerate kinase [KO:K00865] [EC:2.7.1.165]
RHA1_ro02573  glycerate kinase [KO:K00865] [EC:2.7.1.165]
RHA1_ro08824  fumarate hydratase, class I [KO:K03779] [EC:4.2.1.32]
RHA1_ro08823  ttdB; L(+)-tartrate dehydratase beta subunit [KO:K03780] [EC:4.2.1.32]
RHA1_ro08803  probable tartrate dehydrogenase/3-isopropylmalate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
RHA1_ro04803  probable 3-isopropylmalate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
RHA1_ro02367  KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
RHA1_ro02464  2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
RHA1_ro02786  probable 2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
RHA1_ro06012  odhA; 2-oxoglutarate dehydrogenase, E1 and E2 components [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
RHA1_ro00201  possible oxalate decarboxylase [KO:K01569] [EC:4.1.1.2]
RHA1_ro02096  probable formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
RHA1_ro01818  probable formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
RHA1_ro02124  formamidase [KO:K01455] [EC:3.5.1.49]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rha00010  Glycolysis / Gluconeogenesis
rha00020  Citrate cycle (TCA cycle)
rha00030  Pentose phosphate pathway
rha00053  Ascorbate and aldarate metabolism
rha00071  Fatty acid degradation
rha00230  Purine metabolism
rha00250  Alanine, aspartate and glutamate metabolism
rha00260  Glycine, serine and threonine metabolism
rha00620  Pyruvate metabolism
rha00710  Carbon fixation by Calvin cycle
rha00750  Vitamin B6 metabolism
rha00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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