KEGG   PATHWAY: rhb00020
Entry
rhb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rhodococcus sp. B7740
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rhb00020  Citrate cycle (TCA cycle)
rhb00020

Module
rhb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rhb00020]
rhb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rhb00020]
rhb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rhb00020]
rhb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rhb00020]
rhb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rhb00020]
Other DBs
GO: 0006099
Organism
Rhodococcus sp. B7740 [GN:rhb]
Gene
NY08_2539  Citrate synthase [KO:K01647] [EC:2.3.3.1]
NY08_2544  Citrate synthase [KO:K01647] [EC:2.3.3.1]
NY08_2986  Citrate synthase [KO:K01647] [EC:2.3.3.1]
NY08_2987  Citrate synthase [KO:K01647] [EC:2.3.3.1]
NY08_1074  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
NY08_5212  Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NY08_5093  Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
NY08_4633  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
NY08_4084  Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase [KO:K00382] [EC:1.8.1.4]
NY08_2422  Succinyl-CoA ligase [KO:K01902] [EC:6.2.1.5]
NY08_2423  Succinyl-CoA ligase [KO:K01903] [EC:6.2.1.5]
NY08_1775  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NY08_1776  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
NY08_1773  Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
NY08_1774  Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
NY08_4958  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
NY08_2253  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NY08_1405  Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
NY08_1474  Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
NY08_3205  Phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
NY08_3125  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
NY08_588  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
NY08_636  Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rhb00010  Glycolysis / Gluconeogenesis
rhb00053  Ascorbate and aldarate metabolism
rhb00061  Fatty acid biosynthesis
rhb00062  Fatty acid elongation
rhb00071  Fatty acid degradation
rhb00190  Oxidative phosphorylation
rhb00220  Arginine biosynthesis
rhb00250  Alanine, aspartate and glutamate metabolism
rhb00280  Valine, leucine and isoleucine degradation
rhb00350  Tyrosine metabolism
rhb00470  D-Amino acid metabolism
rhb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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