KEGG   PATHWAY: rhey00020
Entry
rhey00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Rodentibacter caecimuris
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rhey00020  Citrate cycle (TCA cycle)
rhey00020

Module
rhey_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rhey00020]
rhey_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rhey00020]
rhey_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rhey00020]
rhey_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rhey00020]
rhey_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rhey00020]
Other DBs
GO: 0006099
Organism
Rodentibacter caecimuris [GN:rhey]
Gene
FEE42_12370  citrate synthase [KO:K01647] [EC:2.3.3.1]
FEE42_12375  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
FEE42_12380  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FEE42_01400  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FEE42_01405  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FEE42_00065  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FEE42_01415  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FEE42_01410  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FEE42_11230  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
FEE42_11225  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
FEE42_11220  frdC; fumarate reductase subunit FrdC [KO:K00246]
FEE42_11215  frdD; fumarate reductase subunit FrdD [KO:K00247]
FEE42_12400  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FEE42_01390  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FEE42_06720  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FEE42_00055  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
FEE42_00060  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rhey00010  Glycolysis / Gluconeogenesis
rhey00053  Ascorbate and aldarate metabolism
rhey00061  Fatty acid biosynthesis
rhey00071  Fatty acid degradation
rhey00190  Oxidative phosphorylation
rhey00220  Arginine biosynthesis
rhey00250  Alanine, aspartate and glutamate metabolism
rhey00280  Valine, leucine and isoleucine degradation
rhey00350  Tyrosine metabolism
rhey00470  D-Amino acid metabolism
rhey00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system