KEGG   PATHWAY: rhoa00020
Entry
rhoa00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Rhodoferax sp. AJA081-3
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rhoa00020  Citrate cycle (TCA cycle)
rhoa00020

Module
rhoa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rhoa00020]
rhoa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rhoa00020]
rhoa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rhoa00020]
rhoa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rhoa00020]
rhoa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rhoa00020]
Other DBs
GO: 0006099
Organism
Rhodoferax sp. AJA081-3 [GN:rhoa]
Gene
HZ993_08010  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HZ993_20130  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
HZ993_07960  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HZ993_17670  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HZ993_05670  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HZ993_01865  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HZ993_01870  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HZ993_12505  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HZ993_21780  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HZ993_00900  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HZ993_01875  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HZ993_15650  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HZ993_15645  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HZ993_07995  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HZ993_08000  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HZ993_07985  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HZ993_07990  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
HZ993_04990  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HZ993_07755  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HZ993_07975  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HZ993_14170  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
HZ993_00890  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HZ993_05935  mdeB; alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
HZ993_00895  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rhoa00010  Glycolysis / Gluconeogenesis
rhoa00061  Fatty acid biosynthesis
rhoa00071  Fatty acid degradation
rhoa00190  Oxidative phosphorylation
rhoa00220  Arginine biosynthesis
rhoa00250  Alanine, aspartate and glutamate metabolism
rhoa00280  Valine, leucine and isoleucine degradation
rhoa00350  Tyrosine metabolism
rhoa00470  D-Amino acid metabolism
rhoa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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