KEGG   PATHWAY: rht00630
Entry
rht00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pseudorhizobium banfieldiae
Class
Metabolism; Carbohydrate metabolism
Pathway map
rht00630  Glyoxylate and dicarboxylate metabolism
rht00630

Module
rht_M00012  Glyoxylate cycle [PATH:rht00630]
rht_M00621  Glycine cleavage system [PATH:rht00630]
rht_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rht00630]
Other DBs
GO: 0046487 0043648
Organism
Pseudorhizobium banfieldiae [GN:rht]
Gene
NT26_0272  aceA; Isocitrate lyase [KO:K01637] [EC:4.1.3.1]
NT26_3400  Acetyl-CoA synthetase protein [KO:K01895] [EC:6.2.1.1]
NT26_p10255  acsA; Acetyl-coenzyme A synthetase (Acetate--CoA ligase) (Acyl-activating enzyme, ATP-hydrolysing) [KO:K01895] [EC:6.2.1.1]
NT26_3811  acsA; Acetyl-coenzyme A synthetase (Acetate--CoA ligase) (Acyl-activating enzyme) [KO:K01895] [EC:6.2.1.1]
NT26_p10250  glcB; Malate synthase G (GlcB) [KO:K01638] [EC:2.3.3.9]
NT26_3880  glcB; Malate synthase G [KO:K01638] [EC:2.3.3.9]
NT26_3492  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NT26_1612  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
NT26_3541  acnA; Aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
NT26_0120  putative acyl-CoA ketothiolase / acetyl-CoA acyltransferase [KO:K00626] [EC:2.3.1.9]
NT26_3604  phbA; Acetyl-CoA acetyltransferase with thiolase domain (Acetoacetyl-CoA thiolase) [KO:K00626] [EC:2.3.1.9]
NT26_3632  Thiolase [KO:K00626] [EC:2.3.1.9]
NT26_3603  phbB; acetoacetyl-coA reductase [KO:K00023] [EC:1.1.1.36]
NT26_1282  Putative glyoxalase I family protein; putative Methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
NT26_3937  PCCA; Propionyl-CoA carboxylase alpha chain, mitochondrial [KO:K01965] [EC:6.4.1.3]
NT26_3940  putative propionyl-CoA carboxylase beta chain [KO:K01966] [EC:6.4.1.3 2.1.3.15]
NT26_3935  bhbA; Methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
NT26_0397  glcD; Glycolate oxidase subunit glcD [KO:K00104] [EC:1.1.99.14]
NT26_p10252  glcD; Putative glycolate oxidase subunit GlcD; FAD-dependent oxidase [KO:K00104] [EC:1.1.99.14]
NT26_0398  FAD linked oxidase domain protein [KO:K11472] [EC:1.1.99.14]
NT26_p10253  glcE; Putative glycolate oxidase subunit GlcE; FAD-dependent oxidase [KO:K11472] [EC:1.1.99.14]
NT26_0399  glcF; Glycolate oxidase subunit, (Fe-S)protein, GlcF [KO:K11473] [EC:1.1.99.14]
NT26_p10254  glcF; Glycolate oxidase subunit GlcF, (4Fe-4S) protein [KO:K11473] [EC:1.1.99.14]
NT26_3975  katA; Catalase [KO:K03781] [EC:1.11.1.6]
NT26_0389  katA; Catalase A [KO:K03781] [EC:1.11.1.6]
NT26_4046  putative D-isomer specific 2-hydroxyacid dehydrogenases family protein; putative Glyoxylate reductase (Glycolate reductase) [KO:K00015] [EC:1.1.1.26]
NT26_4091  2-hydroxyacid dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
NT26_1720  HAD-superfamily hydrolase, subfamily IA, variant 1 [KO:K01091] [EC:3.1.3.18]
NT26_1909  gph; Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
NT26_0429  Phosphoglycolate phosphatase protein [KO:K01091] [EC:3.1.3.18]
NT26_0666  Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
NT26_0670  cbbL; Ribulose bisphosphate carboxylase large chain (RuBisCO large subunit) [KO:K01601] [EC:4.1.1.39]
NT26_0669  cbbS; Ribulose bisphosphate carboxylase small chain (RuBisCO small subunit) [KO:K01602] [EC:4.1.1.39]
NT26_1809  glnA; Glutamine synthetase I (Glutamate--ammonia ligase I) (GSI) [KO:K01915] [EC:6.3.1.2]
NT26_0955  Glutamine synthetase catalytic region [KO:K01915] [EC:6.3.1.2]
NT26_0267  glnA; Glutamine synthetase protein [KO:K01915] [EC:6.3.1.2]
NT26_0296  glnA; Glutamine synthetase [KO:K01915] [EC:6.3.1.2]
NT26_3725  glnII; Glutamine synthetase II (Glutamate--ammonia ligase II) (GSII) [KO:K01915] [EC:6.3.1.2]
NT26_2189  Glutamine synthetase catalytic region [KO:K01915] [EC:6.3.1.2]
NT26_1192  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
NT26_1937  gcvP; Glycine cleavage system P-protein (glycine dehydrogenase) [KO:K00281] [EC:1.4.4.2]
NT26_1935  gcvT; glycine cleavage system T-protein (aminomethyltransferase) [KO:K00605] [EC:2.1.2.10]
NT26_1623  lpD; Dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
NT26_2591  lpdV; Dihydrolipoyl dehydrogenase (Dihydrolipoamide dehydrogenase) (LPD-Val) (Branched-chain alpha-keto acid dehydrogenase complex E3 component) [KO:K00382] [EC:1.8.1.4]
NT26_3485  lpd; dihydrolipoamide dehydrogenase, FAD/NAD(P)-binding, component of the 2-oxoglutarate dehydrogenase and the pyruvate dehydrogenase complexes [KO:K00382] [EC:1.8.1.4]
NT26_1936  gcvH; Glycine cleavage system H-protein [KO:K02437]
NT26_3719  glxR; 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
NT26_3755  ttuD; putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
NT26_p10292  Putative tartrate dehydratase/fumarate hydratase classe I alpha chain, Fe-S type hydro-lyase [KO:K03779] [EC:4.2.1.32]
NT26_p10291  Putative tartrate dehydratase/fumarate hydratase classe I beta chain, Fe-S type hydro-lyase [KO:K03780] [EC:4.2.1.32]
NT26_0727  yeaU; tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
NT26_0728  ttuC; Tartrate dehydrogenase/decarboxylase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
NT26_2804  eda; KHG/KDPG aldolase [Includes: 4-hydroxy-2-oxoglutarate aldolase; 2-dehydro-3-deoxy-phosphogluconate aldolase] [KO:K01625] [EC:4.1.2.14 4.1.3.42]
NT26_3468  fdsD; NAD-dependent formate dehydrogenase delta subunit [KO:K00126] [EC:1.17.1.9]
NT26_3470  fdsA; Formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
NT26_3471  fdsB; Putative formate dehydrogenase beta subunit [KO:K00124]
NT26_3472  fdsG; putative formate dehydrogenase gamma subunit [KO:K00127]
NT26_3981  conserved protein of unknown function [KO:K01432] [EC:3.5.1.9]
NT26_3105  purU; Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
NT26_0570  putative Coenzyme a synthetase-like protein [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rht00010  Glycolysis / Gluconeogenesis
rht00020  Citrate cycle (TCA cycle)
rht00030  Pentose phosphate pathway
rht00053  Ascorbate and aldarate metabolism
rht00071  Fatty acid degradation
rht00230  Purine metabolism
rht00250  Alanine, aspartate and glutamate metabolism
rht00260  Glycine, serine and threonine metabolism
rht00620  Pyruvate metabolism
rht00710  Carbon fixation by Calvin cycle
rht00750  Vitamin B6 metabolism
rht00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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