KEGG   PATHWAY: rir00010
Entry
rir00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Agrobacterium pusense IRBG74
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rir00010  Glycolysis / Gluconeogenesis
rir00010

Module
rir_M00002  Glycolysis, core module involving three-carbon compounds [PATH:rir00010]
rir_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rir00010]
Other DBs
GO: 0006096 0006094
Organism
Agrobacterium pusense IRBG74 [GN:rir]
Gene
BN877_I0181  glk; Glucokinase [KO:K00845] [EC:2.7.1.2]
BN877_I0409  pgi; glucosephosphate isomerase [KO:K01810] [EC:5.3.1.9]
BN877_I2186  pfp; Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [KO:K00895] [EC:2.7.1.90]
BN877_II0688  putative fructose-bisphosphate aldolase class 1 [KO:K01623] [EC:4.1.2.13]
BN877_I1589  tpiA; Triosephosphate isomerase (TIM) (Triose-phosphate isomerase) [KO:K01803] [EC:5.3.1.1]
BN877_II0685  cbbG; Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) [KO:K00134] [EC:1.2.1.12]
BN877_II0687  cbbK; phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
BN877_I2431  Fructose-2,6-bisphosphatase [KO:K15634] [EC:5.4.2.11]
BN877_II0486  gpmI; phosphoglycero mutase III, cofactor-independent [KO:K15633] [EC:5.4.2.12]
BN877_I1385  eno; Enolase (2-phosphoglycerate dehydratase) (2-phospho-D-glycerate hydro-lyase) [KO:K01689] [EC:4.2.1.11]
BN877_II0714  pyk; Pyruvate kinase [KO:K00873] [EC:2.7.1.40]
BN877_I0781  ppdK; pyruvate phosphate dikinase [KO:K01006] [EC:2.7.9.1]
BN877_p0352  putative dehydrogenase [KO:K00163] [EC:1.2.4.1]
BN877_I1388  pdhA; Pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
BN877_I1389  pdhB; Pyruvate dehydrogenase E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
BN877_I1390  pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) [KO:K00627] [EC:2.3.1.12]
BN877_I1392  lpdA1; Dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
BN877_I2717  lpdA2; dihydrolipoamide dehydrogenase, FAD/NAD(P)-binding, component of the 2-oxoglutarate dehydrogenase and the pyruvate dehydrogenase complexes [KO:K00382] [EC:1.8.1.4]
BN877_I1633  adhC; Alcohol dehydrogenase class III (S-(hydroxymethyl)glutathione dehydrogenase) (Glutathione-dependent formaldehyde dehydrogenase) (FDH) (FALDH) (GSH-FDH) [KO:K00121] [EC:1.1.1.284 1.1.1.1]
BN877_I0596  adhA; alcohol dehydrogenase [KO:K13953] [EC:1.1.1.1]
BN877_I2219  Zn-dependent alcohol dehydrogenase [KO:K00001] [EC:1.1.1.1]
BN877_I2099  putative oxidoreductase, Zn-dependent and NAD(P)-binding [KO:K13979] [EC:1.1.1.2]
BN877_I1527  putative oxidoreductase, Zn-dependent and NAD(P)-binding [KO:K13979] [EC:1.1.1.2]
BN877_II1411  NAD-dependent aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
BN877_II1903  putative Aldehyde dehydrogenase (NAD(+)) [KO:K00128] [EC:1.2.1.3]
BN877_I2299  aldB; aldehyde dehydrogenase [KO:K00138] [EC:1.2.1.-]
BN877_I2829  acsA1; Acetyl-coenzyme A synthetase (Acetate--CoA ligase) (Acyl-activating enzyme) [KO:K01895] [EC:6.2.1.1]
BN877_p0237  acsA3; Acetyl-coenzyme A synthetase (Acetate--CoA ligase) (Acyl-activating enzyme) [KO:K01895] [EC:6.2.1.1]
BN877_I2804  Galm; Aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
BN877_II1212  Aldose epimerase [KO:K01785] [EC:5.1.3.3]
BN877_II1814  Galactose mutarotase [KO:K01785] [EC:5.1.3.3]
BN877_II1204  pgm; Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
BN877_I0036  pckA; Phosphoenolpyruvate carboxykinase [ATP] (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rir00020  Citrate cycle (TCA cycle)
rir00030  Pentose phosphate pathway
rir00500  Starch and sucrose metabolism
rir00620  Pyruvate metabolism
rir00640  Propanoate metabolism
rir00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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