KEGG   PATHWAY: rir00240
Entry
rir00240                    Pathway                                
Name
Pyrimidine metabolism - Agrobacterium pusense IRBG74
Class
Metabolism; Nucleotide metabolism
Pathway map
rir00240  Pyrimidine metabolism
rir00240

Module
rir_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:rir00240]
rir_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:rir00240]
rir_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:rir00240]
rir_M00939  Pyrimidine degradation, uracil => 3-hydroxypropanoate [PATH:rir00240]
Other DBs
GO: 0006220 0006213
Organism
Agrobacterium pusense IRBG74 [GN:rir]
Gene
BN877_I2248  carB; carbamoyl phosphate synthase, large subunit [KO:K01955] [EC:6.3.5.5]
BN877_I2240  carA; carbamoyl phosphate synthetase, glutamine amidotransferase small subunit [KO:K01956] [EC:6.3.5.5]
BN877_I1288  pyrB; aspartate carbamoyltransferase (catalytic subunit) [KO:K00609] [EC:2.1.3.2]
BN877_I0403  pyrC1; dihydro-orotase [KO:K01465] [EC:3.5.2.3]
BN877_I1287  pyrC2; dihydro-orotase [KO:K01465] [EC:3.5.2.3]
BN877_II1577  Dihydroorotase [KO:K01465] [EC:3.5.2.3]
BN877_I0464  pyrD; dihydro-orotate oxidase, FMN-linked (UMP biosynthesis) [KO:K00254] [EC:1.3.5.2]
BN877_I0404  pyrE; Orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
BN877_I0297  pyrF; Orotidine 5'-phosphate decarboxylase (OMP decarboxylase) (OMPDCase) (OMPdecase) [KO:K01591] [EC:4.1.1.23]
BN877_I1362  pyrH; Uridylate kinase (UK) (Uridine monophosphate kinase) (UMP kinase) [KO:K09903] [EC:2.7.4.22]
BN877_I1111  ndk; nucleoside diphosphate kinase (NDK) (NDP kinase) (Nucleoside-2-P kinase) [KO:K00940] [EC:2.7.4.6]
BN877_I1508  mazG; Nucleoside Triphosphate Pyrophosphohydrolase/Pyrophosphatase [KO:K04765] [EC:3.6.1.9]
BN877_I0002  putative maf-like protein [KO:K06287] [EC:3.6.1.-]
BN877_I0510  putative septum formation protein (Maf-like) [KO:K06287] [EC:3.6.1.-]
BN877_I1587  pyrG; CTP synthase (UTP--ammonia ligase) (CTP synthetase) [KO:K01937] [EC:6.3.4.2]
BN877_II1232  cmk; Cytidylate kinase (CK) (Cytidine monophosphate kinase) (CMP kinase) [KO:K00945] [EC:2.7.4.25]
BN877_II0723  5'-nucleotidase [KO:K11751] [EC:3.1.3.5 3.6.1.45]
BN877_I1662  surE; 5'-nucleotidase surE (Nucleoside 5'-monophosphate phosphohydrolase)(survival protein, protein damage control) [KO:K03787] [EC:3.1.3.5 3.1.3.6]
BN877_I0133  upp; uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
BN877_I1193  5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
BN877_II0678  Metallo-phosphoesterase [KO:K09769] [EC:3.1.4.16]
BN877_I1985  Indigoidine synthase A family protein [KO:K16329] [EC:4.2.1.70]
BN877_I0128  cdd; Cytidine deaminase [KO:K01489] [EC:3.5.4.5]
BN877_II1348  putative N-isopropylammelide isopropylaminohydrolase [KO:K01485] [EC:3.5.4.1 3.5.4.21]
BN877_I0438  dcd; deoxycytidine triphosphate (dCTP) deaminase [KO:K01494] [EC:3.5.4.13]
BN877_I0067  nrdE; ribonucleoside-diphosphate reductase 2, alpha subunit [KO:K00525] [EC:1.17.4.1]
BN877_I1693  nrd; ribonucleotide reductase large subunit [KO:K00525] [EC:1.17.4.1]
BN877_I0068  nrdF; ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [KO:K00526] [EC:1.17.4.1]
BN877_I1039  putative metal dependent phosphohydrolase [KO:K06952] [EC:3.1.3.89]
BN877_I1826  protein of unknown function [KO:K06952] [EC:3.1.3.89]
BN877_I1467  tmk; thymidylate kinase [KO:K00943] [EC:2.7.4.9]
BN877_I0314  dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) (dUTP pyrophosphatase) [KO:K01520] [EC:3.6.1.23]
BN877_I0131  deoA; thymidine phosphorylase [KO:K00758] [EC:2.4.2.4]
BN877_I2367  tdk; thymidine kinase/deoxyuridine kinase [KO:K00857] [EC:2.7.1.21]
BN877_I2124  thyA; Thymidylate synthase (TS) (TSase) [KO:K00560] [EC:2.1.1.45]
BN877_I2463  dht; D-hydantoinase (Dihydropyrimidinase) (DHPase) [KO:K01464] [EC:3.5.2.2]
BN877_I2462  Allantoate amidohydrolase [KO:K06016] [EC:3.5.1.6 3.5.1.87]
BN877_p0407  N-carbamoyl-L-amino acid hydrolase [KO:K06016] [EC:3.5.1.6 3.5.1.87]
BN877_p0442  amaB; Amidase, hydantoinase/carbamoylase [KO:K06016] [EC:3.5.1.6 3.5.1.87]
BN877_I2581  rutA; monooxygenase of the alternative pyrimidine degradation pathway [KO:K09018] [EC:1.14.99.46]
BN877_I2576  rutF; flavin:NADH oxidoreductase subunit of alternative pyrimidine degradation pathway [KO:K09024] [EC:1.5.1.-]
BN877_I2580  rutB; enzyme of the alternative pyrimidine degradation pathway [KO:K09020] [EC:3.5.1.110]
BN877_I2579  rutC; enzyme of the alternative pyrimidine degradation pathway [KO:K09021]
BN877_I2578  rutD; enzyme of the alternative pyrimidine degradation pathway [KO:K09023] [EC:3.5.1.-]
BN877_I2577  rutE; oxidoreductase subunit of the alternative pyrimidine degradation pathway [KO:K09019] [EC:1.1.1.-]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
rir00030  Pentose phosphate pathway
rir00220  Arginine biosynthesis
rir00250  Alanine, aspartate and glutamate metabolism
rir00280  Valine, leucine and isoleucine degradation
rir00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

DBGET integrated database retrieval system