KEGG   PATHWAY: rmb00020
Entry
rmb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Tritonibacter mobilis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rmb00020  Citrate cycle (TCA cycle)
rmb00020

Module
rmb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rmb00020]
rmb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rmb00020]
rmb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rmb00020]
rmb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rmb00020]
rmb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rmb00020]
Other DBs
GO: 0006099
Organism
Tritonibacter mobilis [GN:rmb]
Gene
K529_007720  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
K529_008350  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
K529_008250  aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
K529_002160  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
K529_020695  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
K529_020690  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
K529_007910  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K529_020665  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K529_013600  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K529_020700  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
K529_020715  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
K529_020775  fumarate reductase (quinol) flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
K529_020790  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
K529_020765  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
K529_020770  succinate dehydrogenase [KO:K00242]
K529_006310  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
K529_020730  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
K529_003730  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
K529_011665  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
K529_013390  transketolase [KO:K00163] [EC:1.2.4.1]
K529_016535  transketolase [KO:K00163] [EC:1.2.4.1]
K529_007995  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
K529_008000  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
K529_008005  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rmb00010  Glycolysis / Gluconeogenesis
rmb00053  Ascorbate and aldarate metabolism
rmb00061  Fatty acid biosynthesis
rmb00071  Fatty acid degradation
rmb00190  Oxidative phosphorylation
rmb00220  Arginine biosynthesis
rmb00250  Alanine, aspartate and glutamate metabolism
rmb00280  Valine, leucine and isoleucine degradation
rmb00350  Tyrosine metabolism
rmb00470  D-Amino acid metabolism
rmb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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