KEGG   PATHWAY: rml00020
Entry
rml00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Roseimaritima multifibrata
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rml00020  Citrate cycle (TCA cycle)
rml00020

Module
rml_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rml00020]
rml_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rml00020]
rml_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rml00020]
rml_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rml00020]
rml_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rml00020]
Other DBs
GO: 0006099
Organism
Roseimaritima multifibrata [GN:rml]
Gene
FF011L_40800  gltA2; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
FF011L_15670  acn; Aconitate hydratase precursor [KO:K01681] [EC:4.2.1.3]
FF011L_08300  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
FF011L_10780  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FF011L_15240  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
FF011L_36060  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FF011L_52670  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FF011L_42090  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FF011L_42100  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FF011L_44970  sucD_2; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
FF011L_44960  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
FF011L_15270  frdA; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FF011L_36150  frdB_2; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FF011L_15280  frdB_1; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FF011L_15260  sdhC; Succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
FF011L_43890  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
FF011L_40230  mdh_2; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FF011L_43710  cfiB; 2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
FF011L_18850  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
FF011L_04370  aceE_1; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
FF011L_11030  aceE_2; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
FF011L_11040  pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rml00010  Glycolysis / Gluconeogenesis
rml00053  Ascorbate and aldarate metabolism
rml00061  Fatty acid biosynthesis
rml00071  Fatty acid degradation
rml00190  Oxidative phosphorylation
rml00220  Arginine biosynthesis
rml00250  Alanine, aspartate and glutamate metabolism
rml00280  Valine, leucine and isoleucine degradation
rml00350  Tyrosine metabolism
rml00470  D-Amino acid metabolism
rml00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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