KEGG   PATHWAY: rmt00020
Entry
rmt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Roseomonas marmotae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rmt00020  Citrate cycle (TCA cycle)
rmt00020

Module
rmt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rmt00020]
rmt_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rmt00020]
rmt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rmt00020]
rmt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rmt00020]
rmt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rmt00020]
Other DBs
GO: 0006099
Organism
Roseomonas marmotae [GN:rmt]
Gene
IAI58_09750  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
IAI58_07605  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
IAI58_10605  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
IAI58_05665  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
IAI58_14675  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
IAI58_05670  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
IAI58_05680  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IAI58_10475  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IAI58_05660  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
IAI58_05655  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
IAI58_20550  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
IAI58_05625  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
IAI58_05630  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
IAI58_05615  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
IAI58_05620  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
IAI58_08845  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
IAI58_17710  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
IAI58_17715  fumarate hydratase C-terminal domain-containing protein [KO:K01678] [EC:4.2.1.2]
IAI58_08825  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
IAI58_05650  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IAI58_01585  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
IAI58_05760  transketolase [KO:K00163] [EC:1.2.4.1]
IAI58_10495  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
IAI58_10490  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
IAI58_10485  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rmt00010  Glycolysis / Gluconeogenesis
rmt00053  Ascorbate and aldarate metabolism
rmt00061  Fatty acid biosynthesis
rmt00071  Fatty acid degradation
rmt00190  Oxidative phosphorylation
rmt00220  Arginine biosynthesis
rmt00250  Alanine, aspartate and glutamate metabolism
rmt00280  Valine, leucine and isoleucine degradation
rmt00350  Tyrosine metabolism
rmt00470  D-Amino acid metabolism
rmt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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