KEGG   PATHWAY: rpop00020
Entry
rpop00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Roseibium porphyridii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rpop00020  Citrate cycle (TCA cycle)
rpop00020

Module
rpop_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rpop00020]
rpop_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rpop00020]
rpop_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rpop00020]
rpop_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rpop00020]
rpop_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rpop00020]
Other DBs
GO: 0006099
Organism
Roseibium porphyridii [GN:rpop]
Gene
K1718_14585  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
K1718_01610  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
K1718_01615  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
K1718_09385  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
K1718_03660  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
K1718_09335  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
K1718_03665  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
K1718_11530  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
K1718_11595  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
K1718_26635  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
K1718_26630  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
K1718_14815  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K1718_26610  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K1718_26640  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
K1718_26645  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
K1718_26750  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
K1718_26760  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
K1718_26740  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
K1718_26745  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
K1718_17055  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
K1718_14620  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
K1718_26650  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
K1718_03275  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
K1718_26485  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
K1718_19210  1-deoxy-D-xylulose-5-phosphate synthase N-terminal domain-containing protein [KO:K00163] [EC:1.2.4.1]
K1718_14800  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
K1718_14805  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
K1718_14810  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
K1718_16225  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
K1718_16220  thiamine pyrophosphate-dependent enzyme [KO:K00170] [EC:1.2.7.1]
K1718_16230  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rpop00010  Glycolysis / Gluconeogenesis
rpop00053  Ascorbate and aldarate metabolism
rpop00061  Fatty acid biosynthesis
rpop00071  Fatty acid degradation
rpop00190  Oxidative phosphorylation
rpop00220  Arginine biosynthesis
rpop00250  Alanine, aspartate and glutamate metabolism
rpop00280  Valine, leucine and isoleucine degradation
rpop00350  Tyrosine metabolism
rpop00470  D-Amino acid metabolism
rpop00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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