KEGG   PATHWAY: rsr00020
Entry
rsr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Roseivirga spongicola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rsr00020  Citrate cycle (TCA cycle)
rsr00020

Module
rsr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rsr00020]
rsr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rsr00020]
rsr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rsr00020]
rsr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rsr00020]
rsr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rsr00020]
Other DBs
GO: 0006099
Organism
Roseivirga spongicola [GN:rsr]
Gene
T7867_15370  citrate synthase [KO:K01647] [EC:2.3.3.1]
T7867_14180  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
T7867_14185  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
T7867_08340  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
T7867_11340  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
T7867_03435  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
T7867_00905  dihydrolipoamide acetyltransferase family protein [KO:K00658] [EC:2.3.1.61]
T7867_03440  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
T7867_03445  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
T7867_08530  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
T7867_08690  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
T7867_13065  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
T7867_10520  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
T7867_10525  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
T7867_10515  succinate dehydrogenase cytochrome b subunit [KO:K00241]
T7867_06050  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
T7867_16760  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
T7867_00065  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
T7867_14375  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
T7867_04705  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
T7867_11885  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
T7867_17925  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rsr00010  Glycolysis / Gluconeogenesis
rsr00053  Ascorbate and aldarate metabolism
rsr00061  Fatty acid biosynthesis
rsr00071  Fatty acid degradation
rsr00190  Oxidative phosphorylation
rsr00220  Arginine biosynthesis
rsr00250  Alanine, aspartate and glutamate metabolism
rsr00280  Valine, leucine and isoleucine degradation
rsr00350  Tyrosine metabolism
rsr00470  D-Amino acid metabolism
rsr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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