KEGG   PATHWAY: rsul00020
Entry
rsul00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Rhizobium sullae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rsul00020  Citrate cycle (TCA cycle)
rsul00020

Module
rsul_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rsul00020]
rsul_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rsul00020]
rsul_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rsul00020]
rsul_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rsul00020]
Other DBs
GO: 0006099
Organism
Rhizobium sullae [GN:rsul]
Gene
N2599_08310  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
N2599_08315  citrate synthase [KO:K01647] [EC:2.3.3.1]
N2599_09105  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
N2599_16860  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
N2599_07655  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
N2599_16610  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
N2599_16600  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
N2599_09040  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
N2599_16580  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
N2599_25430  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
N2599_16615  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
N2599_16620  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
N2599_16645  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
N2599_16640  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
N2599_16655  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
N2599_16650  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
N2599_36715  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
N2599_07395  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
N2599_07405  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
N2599_16625  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
N2599_17415  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
N2599_18235  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
N2599_18630  transketolase [KO:K00163] [EC:1.2.4.1]
N2599_09065  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
N2599_09060  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
N2599_09055  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rsul00010  Glycolysis / Gluconeogenesis
rsul00053  Ascorbate and aldarate metabolism
rsul00061  Fatty acid biosynthesis
rsul00071  Fatty acid degradation
rsul00190  Oxidative phosphorylation
rsul00220  Arginine biosynthesis
rsul00250  Alanine, aspartate and glutamate metabolism
rsul00280  Valine, leucine and isoleucine degradation
rsul00350  Tyrosine metabolism
rsul00470  D-Amino acid metabolism
rsul00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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