KEGG   PATHWAY: rvc00020
Entry
rvc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rahnella victoriana
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rvc00020  Citrate cycle (TCA cycle)
rvc00020

Module
rvc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rvc00020]
rvc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rvc00020]
rvc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rvc00020]
rvc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rvc00020]
rvc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rvc00020]
Other DBs
GO: 0006099
Organism
Rahnella victoriana [GN:rvc]
Gene
J9880_01445  citrate synthase [KO:K01647] [EC:2.3.3.1]
J9880_19990  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
J9880_04010  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
J9880_00420  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
J9880_01420  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
J9880_01415  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
J9880_04035  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J9880_01405  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
J9880_01410  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
J9880_01430  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
J9880_01425  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
J9880_01440  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
J9880_01435  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
J9880_09830  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
J9880_09825  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
J9880_09820  frdC; fumarate reductase subunit FrdC [KO:K00246]
J9880_09815  frdD; fumarate reductase subunit FrdD [KO:K00247]
J9880_21845  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
J9880_18300  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
J9880_07930  transcriptional regulator [KO:K01774] [EC:4.2.1.2]
J9880_10090  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
J9880_08445  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
J9880_08455  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
J9880_09035  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
J9880_04045  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
J9880_04040  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
J9880_19075  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rvc00010  Glycolysis / Gluconeogenesis
rvc00053  Ascorbate and aldarate metabolism
rvc00061  Fatty acid biosynthesis
rvc00071  Fatty acid degradation
rvc00190  Oxidative phosphorylation
rvc00220  Arginine biosynthesis
rvc00250  Alanine, aspartate and glutamate metabolism
rvc00280  Valine, leucine and isoleucine degradation
rvc00350  Tyrosine metabolism
rvc00470  D-Amino acid metabolism
rvc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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