KEGG   PATHWAY: sagu00020
Entry
sagu00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sagittula sp. P11
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sagu00020  Citrate cycle (TCA cycle)
sagu00020

Module
sagu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sagu00020]
sagu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sagu00020]
sagu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sagu00020]
sagu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sagu00020]
sagu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sagu00020]
Other DBs
GO: 0006099
Organism
Sagittula sp. P11 [GN:sagu]
Gene
CDO87_24210  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
CDO87_14815  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
CDO87_24345  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
CDO87_22020  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CDO87_18465  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
CDO87_21410  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CDO87_07305  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CDO87_04440  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CDO87_04445  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CDO87_04480  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CDO87_26255  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CDO87_00215  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CDO87_09230  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CDO87_04425  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CDO87_04415  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CDO87_04360  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CDO87_04345  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CDO87_04370  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CDO87_04365  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CDO87_20670  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CDO87_04405  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CDO87_01805  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CDO87_08290  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CDO87_09240  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CDO87_01040  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CDO87_01050  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
CDO87_01060  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
CDO87_09235  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sagu00010  Glycolysis / Gluconeogenesis
sagu00053  Ascorbate and aldarate metabolism
sagu00061  Fatty acid biosynthesis
sagu00071  Fatty acid degradation
sagu00190  Oxidative phosphorylation
sagu00220  Arginine biosynthesis
sagu00250  Alanine, aspartate and glutamate metabolism
sagu00280  Valine, leucine and isoleucine degradation
sagu00350  Tyrosine metabolism
sagu00470  D-Amino acid metabolism
sagu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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