KEGG   PATHWAY: salk00020
Entry
salk00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Salinimonas iocasae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
salk00020  Citrate cycle (TCA cycle)
salk00020

Module
salk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:salk00020]
salk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:salk00020]
salk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:salk00020]
salk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:salk00020]
salk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:salk00020]
Other DBs
GO: 0006099
Organism
Salinimonas iocasae [GN:salk]
Gene
FBQ74_08810  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
FBQ74_01470  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
FBQ74_14145  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
FBQ74_07430  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FBQ74_13035  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
FBQ74_08785  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FBQ74_08780  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FBQ74_04535  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FBQ74_08770  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FBQ74_08775  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FBQ74_08795  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FBQ74_08790  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FBQ74_08805  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
FBQ74_08800  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
FBQ74_08390  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
FBQ74_06840  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FBQ74_02730  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FBQ74_01405  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
FBQ74_04525  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
FBQ74_04530  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
salk00010  Glycolysis / Gluconeogenesis
salk00053  Ascorbate and aldarate metabolism
salk00061  Fatty acid biosynthesis
salk00071  Fatty acid degradation
salk00190  Oxidative phosphorylation
salk00220  Arginine biosynthesis
salk00250  Alanine, aspartate and glutamate metabolism
salk00280  Valine, leucine and isoleucine degradation
salk00350  Tyrosine metabolism
salk00470  D-Amino acid metabolism
salk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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